Variant report

Variant	rs6733895
Chromosome Location	chr2:100666082-100666083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100664157..100666108-chr2:100671125..100674050,2	MCF-7	breast:
2	chr2:100664977..100666534-chr2:100666677..100669564,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10209110	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10211595	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1062143	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11123804	0.94[ASN][1000 genomes]
rs11123805	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1115910	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11681737	0.92[ASN][1000 genomes]
rs11685341	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12712062	0.93[ASN][1000 genomes]
rs12712063	0.99[ASN][1000 genomes]
rs12995420	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12997584	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1370356	0.95[ASN][1000 genomes]
rs1821828	0.93[ASN][1000 genomes]
rs1821829	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2309748	0.93[ASN][1000 genomes]
rs2576678	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2871326	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6542905	0.96[ASN][1000 genomes]
rs6714788	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6749757	0.80[EUR][1000 genomes]
rs6750720	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6754099	0.93[ASN][1000 genomes]
rs7558817	0.96[ASN][1000 genomes]
rs7582731	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7599083	0.94[ASN][1000 genomes]
rs7605430	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9308833	0.97[ASN][1000 genomes]
rs961788	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100644600-100668400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:100648200-100666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:100653200-100667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:100654800-100668200	Weak transcription	Thymus	Thymus
5	chr2:100656400-100680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:100656600-100686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:100658800-100668400	Weak transcription	Brain Germinal Matrix	brain
8	chr2:100659400-100680000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:100659800-100671600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:100660000-100669000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:100660600-100678200	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:100660800-100668800	Weak transcription	Lung	lung
13	chr2:100661600-100668800	Weak transcription	Fetal Brain Female	brain
14	chr2:100661800-100667200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:100661800-100668400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:100661800-100670400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:100662200-100684800	Weak transcription	Ovary	ovary
18	chr2:100662800-100667400	Weak transcription	Dnd41	blood
19	chr2:100662800-100674200	Weak transcription	Colon Smooth Muscle	Colon
20	chr2:100663000-100670400	Weak transcription	Gastric	stomach
21	chr2:100663000-100680800	Weak transcription	Fetal Kidney	kidney
22	chr2:100663000-100682200	Weak transcription	Fetal Heart	heart
23	chr2:100663400-100671600	Weak transcription	Primary T cells from cord blood	blood
24	chr2:100664400-100667200	Weak transcription	Fetal Brain Male	brain
25	chr2:100664400-100699600	Weak transcription	Aorta	Aorta
26	chr2:100664800-100668800	Weak transcription	Fetal Lung	lung
27	chr2:100665600-100666800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr2:100665600-100667400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:100665800-100669200	Weak transcription	Left Ventricle	heart
30	chr2:100666000-100666800	Weak transcription	Primary B cells from cord blood	blood

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