Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10209110	0.93[ASN][1000 genomes]
rs10211595	0.90[ASN][1000 genomes]
rs1062143	0.96[ASN][1000 genomes]
rs11123805	0.99[ASN][1000 genomes]
rs1115910	0.99[ASN][1000 genomes]
rs11681737	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11685341	0.82[ASN][1000 genomes]
rs12712062	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12712063	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12995420	0.97[ASN][1000 genomes]
rs12997584	0.99[ASN][1000 genomes]
rs1370356	0.92[ASN][1000 genomes]
rs1821828	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1821829	0.84[ASN][1000 genomes]
rs2309748	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2576678	0.91[ASN][1000 genomes]
rs2871326	0.96[ASN][1000 genomes]
rs4851243	0.80[ASN][1000 genomes]
rs56935201	0.80[ASN][1000 genomes]
rs6542905	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6714788	0.91[ASN][1000 genomes]
rs6733895	0.94[ASN][1000 genomes]
rs6750720	0.88[ASN][1000 genomes]
rs6754099	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7558817	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7582731	0.91[ASN][1000 genomes]
rs7599083	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7605430	0.99[ASN][1000 genomes]
rs9308833	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs961788	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100624800-100657800	Weak transcription	Brain Germinal Matrix	brain
2	chr2:100629400-100649600	Weak transcription	Fetal Brain Female	brain
3	chr2:100633400-100645800	Weak transcription	Gastric	stomach
4	chr2:100633600-100652400	Weak transcription	Ovary	ovary
5	chr2:100633600-100653000	Weak transcription	Fetal Lung	lung
6	chr2:100633600-100660600	Weak transcription	Lung	lung
7	chr2:100637200-100658400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:100638800-100643800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:100638800-100643800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:100638800-100644000	Weak transcription	Primary B cells from cord blood	blood
11	chr2:100639000-100643600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:100639000-100643800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:100639000-100660600	Weak transcription	Primary T cells from cord blood	blood
14	chr2:100639400-100643600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:100639600-100657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:100640200-100648000	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search: