Variant report

Variant	rs1821828
Chromosome Location	chr2:100680401-100680402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100679481..100681088-chr2:100682826..100685601,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10209110	0.99[ASN][1000 genomes]
rs10211595	0.96[ASN][1000 genomes]
rs1062143	0.95[ASN][1000 genomes]
rs11123804	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11123805	0.91[ASN][1000 genomes]
rs1115910	0.93[ASN][1000 genomes]
rs11681737	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12712062	0.89[ASN][1000 genomes]
rs12712063	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12995420	0.91[ASN][1000 genomes]
rs12997584	0.91[ASN][1000 genomes]
rs1370356	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17023468	0.81[AFR][1000 genomes]
rs1821829	0.90[ASN][1000 genomes]
rs2309748	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2576678	0.96[ASN][1000 genomes]
rs2871326	0.95[ASN][1000 genomes]
rs6542905	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6714788	0.98[ASN][1000 genomes]
rs6733895	0.93[ASN][1000 genomes]
rs6750720	0.87[ASN][1000 genomes]
rs6754099	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7558817	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7582731	0.98[ASN][1000 genomes]
rs7599083	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7605430	0.93[ASN][1000 genomes]
rs9308833	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs961788	0.92[ASN][1000 genomes]
rs9784000	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100656600-100686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr2:100662200-100684800	Weak transcription	Ovary	ovary
3	chr2:100663000-100680800	Weak transcription	Fetal Kidney	kidney
4	chr2:100663000-100682200	Weak transcription	Fetal Heart	heart
5	chr2:100664400-100699600	Weak transcription	Aorta	Aorta
6	chr2:100667800-100688000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:100669400-100681200	Weak transcription	Brain Germinal Matrix	brain
8	chr2:100669800-100680600	Weak transcription	Fetal Brain Female	brain
9	chr2:100672800-100682400	Weak transcription	Fetal Brain Male	brain
10	chr2:100674800-100682400	Weak transcription	Adipose Nuclei	Adipose
11	chr2:100674800-100682800	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:100675200-100683200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:100677600-100680600	Weak transcription	Fetal Lung	lung
14	chr2:100677600-100680800	Weak transcription	GM12878-XiMat	blood
15	chr2:100678000-100686600	Weak transcription	Primary T cells from cord blood	blood
16	chr2:100678000-100687600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:100678400-100680600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:100678400-100680800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr2:100679000-100680600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:100679000-100681000	Weak transcription	Thymus	Thymus
21	chr2:100679200-100680800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:100679200-100682400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:100679400-100680600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr2:100679400-100680600	Weak transcription	Dnd41	blood
25	chr2:100679600-100686000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:100679600-100689600	Weak transcription	Spleen	Spleen
27	chr2:100679800-100680600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:100679800-100680600	Strong transcription	Primary B cells from cord blood	blood
29	chr2:100680000-100680800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:100680200-100681200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:100680400-100680600	Weak transcription	Fetal Thymus	thymus

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