Variant report
| Variant | rs6750809 |
|---|---|
| Chromosome Location | chr2:180734989-180734990 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10183495 | 0.85[EUR][1000 genomes] |
| rs10185471 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10195952 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10205122 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12328338 | 0.80[EUR][1000 genomes] |
| rs13399189 | 0.85[EUR][1000 genomes] |
| rs13407401 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13418648 | 0.84[EUR][1000 genomes] |
| rs1351416 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1480706 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1480707 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs16867045 | 0.82[EUR][1000 genomes] |
| rs2219670 | 0.81[EUR][1000 genomes] |
| rs259845 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4894130 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs55875326 | 0.85[AMR][1000 genomes] |
| rs56090330 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs56351245 | 0.85[AMR][1000 genomes] |
| rs6433810 | 0.80[EUR][1000 genomes] |
| rs7570985 | 0.85[EUR][1000 genomes] |
| rs7588510 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7601013 | 0.87[EUR][1000 genomes] |
| rs7607354 | 0.87[EUR][1000 genomes] |
| rs966440 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428731 | chr2:180629389-180805171 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv875472 | chr2:180696414-181024926 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv875473 | chr2:180696414-181055597 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:180734400-180735000 | Bivalent Enhancer | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
