Variant report

Variant	rs67538199
Chromosome Location	chr15:75361650-75361651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12185102	0.85[ASN][1000 genomes]
rs12324912	0.89[ASN][1000 genomes]
rs12591119	0.85[ASN][1000 genomes]
rs12708514	0.83[ASN][1000 genomes]
rs12898259	0.86[ASN][1000 genomes]
rs12901243	0.87[ASN][1000 genomes]
rs12903201	0.87[ASN][1000 genomes]
rs12910644	0.85[ASN][1000 genomes]
rs1867146	0.85[ASN][1000 genomes]
rs2083731	0.87[ASN][1000 genomes]
rs2120019	0.83[ASN][1000 genomes]
rs2415253	0.86[ASN][1000 genomes]
rs2415254	0.81[ASN][1000 genomes]
rs34237279	0.91[ASN][1000 genomes]
rs34655806	0.90[ASN][1000 genomes]
rs34835684	0.81[ASN][1000 genomes]
rs34913788	0.87[ASN][1000 genomes]
rs35577967	0.85[ASN][1000 genomes]
rs35736167	0.81[ASN][1000 genomes]
rs6495147	0.83[ASN][1000 genomes]
rs67324798	0.87[ASN][1000 genomes]
rs67544533	0.91[ASN][1000 genomes]
rs7162900	0.87[ASN][1000 genomes]
rs7167285	0.87[ASN][1000 genomes]
rs7168680	0.86[ASN][1000 genomes]
rs7173833	0.86[ASN][1000 genomes]
rs7175720	0.85[ASN][1000 genomes]
rs8033837	0.85[ASN][1000 genomes]
rs8036197	0.87[ASN][1000 genomes]
rs8040169	0.87[ASN][1000 genomes]
rs8042409	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75342600-75364800	Weak transcription	Primary T cells from cord blood	blood
2	chr15:75347000-75364000	Weak transcription	Brain Substantia Nigra	brain
3	chr15:75356800-75366600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:75357000-75363200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:75357000-75365400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:75357400-75362200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:75357600-75361800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr15:75357600-75363200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:75358400-75361800	Weak transcription	Right Ventricle	heart
10	chr15:75358400-75368600	Weak transcription	Aorta	Aorta
11	chr15:75359000-75363000	Enhancers	HepG2	liver
12	chr15:75359200-75366200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:75359600-75364400	Enhancers	GM12878-XiMat	blood
14	chr15:75360000-75370000	Weak transcription	Right Atrium	heart
15	chr15:75360200-75361800	Weak transcription	K562	blood
16	chr15:75360600-75362200	Enhancers	Spleen	Spleen
17	chr15:75360600-75364800	Enhancers	Primary B cells from peripheral blood	blood
18	chr15:75360600-75366600	Enhancers	Primary B cells from cord blood	blood
19	chr15:75360800-75361800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:75360800-75361800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:75360800-75368200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:75361000-75361800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr15:75361000-75362800	Enhancers	Primary hematopoietic stem cells	blood
24	chr15:75361200-75361800	Enhancers	Fetal Intestine Large	intestine
25	chr15:75361400-75361800	Enhancers	Fetal Intestine Small	intestine
26	chr15:75361400-75361800	Enhancers	Placenta	Placenta
27	chr15:75361400-75361800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr15:75361400-75362000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr15:75361400-75362400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr15:75361400-75362400	Enhancers	Duodenum Mucosa	Duodenum
31	chr15:75361400-75362600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:75361400-75363600	Enhancers	Fetal Thymus	thymus
33	chr15:75361600-75361800	Enhancers	Fetal Muscle Trunk	muscle
34	chr15:75361600-75361800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr15:75361600-75362000	Enhancers	Lung	lung
36	chr15:75361600-75362400	Enhancers	Adipose Nuclei	Adipose
37	chr15:75361600-75362400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr15:75361600-75362800	Enhancers	Brain Hippocampus Middle	brain

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