Variant report

Variant	rs12910644
Chromosome Location	chr15:75358388-75358389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75354485..75356101-chr15:75356641..75358451,2	K562	blood:
2	chr15:75339319..75341137-chr15:75356875..75359232,2	K562	blood:
3	chr15:75352366..75354623-chr15:75356878..75359032,2	K562	blood:
4	chr15:75351256..75353866-chr15:75357532..75359933,2	K562	blood:
5	chr15:75335307..75337895-chr15:75354566..75358468,3	K562	blood:
6	chr15:75302586..75305269-chr15:75356517..75359179,2	MCF-7	breast:
7	chr15:75335307..75337637-chr15:75355852..75358468,2	K562	blood:

Variant related genes	Relation type
ENSG00000138621	Chromatin interaction
ENSG00000198794	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12185077	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12185078	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12185102	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12324912	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12591119	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12708514	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12898259	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12901243	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12903201	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12917120	0.91[CHB][hapmap]
rs13056	0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1867146	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867150	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2083731	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2120019	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120020	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2289582	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2304903	0.84[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs2415253	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2415254	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415255	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34237279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34655806	0.93[ASN][1000 genomes]
rs34713999	0.86[EUR][1000 genomes]
rs34835684	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34913788	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35577967	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35736167	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35911108	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3850093	0.84[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5020842	0.86[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs59094290	0.84[EUR][1000 genomes]
rs60425110	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495147	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67324798	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67538199	0.85[ASN][1000 genomes]
rs67544533	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7162900	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167285	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7168680	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7173833	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7175720	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8028632	0.84[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8030089	0.85[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs8033837	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8033925	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8036197	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8036573	0.84[EUR][1000 genomes]
rs8040169	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8042409	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9672995	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75340000-75360600	Weak transcription	Gastric	stomach
2	chr15:75340200-75359400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr15:75342600-75364800	Weak transcription	Primary T cells from cord blood	blood
4	chr15:75342800-75361600	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:75346400-75361600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:75347000-75364000	Weak transcription	Brain Substantia Nigra	brain
7	chr15:75353600-75358400	Enhancers	Right Atrium	heart
8	chr15:75354200-75359000	Weak transcription	NHDF-Ad	bronchial
9	chr15:75355600-75358400	Enhancers	Fetal Muscle Leg	muscle
10	chr15:75356400-75358400	Enhancers	Fetal Thymus	thymus
11	chr15:75356600-75358800	Enhancers	GM12878-XiMat	blood
12	chr15:75356600-75359000	Enhancers	Fetal Intestine Small	intestine
13	chr15:75356600-75360000	Enhancers	HSMMtube	muscle
14	chr15:75356600-75360200	Enhancers	Osteobl	bone
15	chr15:75356800-75358600	Enhancers	Fetal Intestine Large	intestine
16	chr15:75356800-75358800	Enhancers	Duodenum Mucosa	Duodenum
17	chr15:75356800-75360200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:75356800-75361000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:75356800-75366600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:75357000-75358400	Enhancers	Adipose Nuclei	Adipose
21	chr15:75357000-75359000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr15:75357000-75359200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:75357000-75359400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:75357000-75360600	Weak transcription	Spleen	Spleen
25	chr15:75357000-75363200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:75357000-75365400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:75357200-75359800	Enhancers	Ovary	ovary
28	chr15:75357200-75360200	Enhancers	HMEC	breast
29	chr15:75357200-75360200	Enhancers	HSMM	muscle
30	chr15:75357400-75358600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:75357400-75359000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:75357400-75359000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr15:75357400-75360200	Enhancers	K562	blood
34	chr15:75357400-75360800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:75357400-75362200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:75357600-75358400	Enhancers	Primary hematopoietic stem cells	blood
37	chr15:75357600-75358400	Enhancers	Left Ventricle	heart
38	chr15:75357600-75358400	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr15:75357600-75358800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:75357600-75359000	Flanking Active TSS	HepG2	liver
41	chr15:75357600-75359800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:75357600-75360000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr15:75357600-75360200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:75357600-75360200	Enhancers	Hela-S3	cervix
45	chr15:75357600-75360800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:75357600-75360800	Enhancers	Primary T cells fromperipheralblood	blood
47	chr15:75357600-75361000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:75357600-75361000	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr15:75357600-75361800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr15:75357600-75363200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links