Variant report

Variant	rs35911108
Chromosome Location	chr15:75322179-75322180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75320623..75324392-chr15:75326315..75329283,4	K562	blood:
2	chr15:75321286..75323042-chr15:75496777..75497847,27	K562	blood:
3	chr15:75314427..75332274-chr15:75491598..75502885,56	MCF-7	breast:
4	chr15:75321284..75322601-chr15:75494010..75494988,6	K562	blood:
5	chr15:75321743..75322266-chr15:75334995..75335833,2	MCF-7	breast:
6	chr15:75321516..75324460-chr15:75459942..75461573,2	MCF-7	breast:
7	chr15:75314704..75323577-chr15:75491522..75500562,29	MCF-7	breast:
8	chr15:75321350..75322254-chr15:75493363..75493944,2	MCF-7	breast:
9	chr15:75321482..75322238-chr15:75494273..75494864,3	MCF-7	breast:
10	chr15:75322075..75324448-chr15:75506120..75508117,2	MCF-7	breast:
11	chr15:75321302..75322293-chr15:75496812..75497792,15	MCF-7	breast:
12	chr15:75321657..75322201-chr15:75335761..75336283,2	K562	blood:
13	chr15:75314737..75326433-chr15:75490770..75500610,30	K562	blood:
14	chr15:75312886..75327225-chr15:75491522..75500922,36	K562	blood:
15	chr15:75320936..75323384-chr15:75742999..75744813,2	K562	blood:
16	chr15:75319473..75322181-chr17:62205905..62208887,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138621	Chromatin interaction
ENSG00000169375	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000178607	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12185077	0.87[EUR][1000 genomes]
rs12185078	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12185102	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12324912	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12591119	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12898259	0.87[AFR][1000 genomes]
rs12901243	0.87[AFR][1000 genomes]
rs12903201	0.87[AFR][1000 genomes]
rs12910644	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12911421	0.83[EUR][1000 genomes]
rs12917120	0.82[AFR][1000 genomes]
rs13056	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1867146	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083731	0.87[AFR][1000 genomes]
rs2120019	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2120020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289582	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2304903	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415253	0.87[AFR][1000 genomes]
rs2415254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2415255	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34237279	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34655806	0.87[AFR][1000 genomes]
rs34713999	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34835684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34913788	0.84[AFR][1000 genomes]
rs35577967	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35736167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3850093	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5020842	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59094290	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60425110	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495147	0.85[AFR][1000 genomes]
rs67324798	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67544533	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7162900	0.85[AFR][1000 genomes]
rs7167285	0.84[AFR][1000 genomes]
rs7168680	0.85[AFR][1000 genomes]
rs7173833	0.87[AFR][1000 genomes]
rs7175720	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8028632	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8030089	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8033837	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8033925	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8036197	0.87[AFR][1000 genomes]
rs8036573	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8040169	0.87[AFR][1000 genomes]
rs8042409	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8042558	0.81[ASN][1000 genomes]
rs9672995	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75316600-75336800	Weak transcription	Fetal Brain Female	brain
2	chr15:75316800-75322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:75316800-75322800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:75316800-75338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:75317200-75335000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:75318000-75341400	Weak transcription	Brain Germinal Matrix	brain
7	chr15:75320200-75322800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:75320400-75323000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:75320600-75323800	Genic enhancers	Fetal Muscle Trunk	muscle
10	chr15:75320800-75322800	Enhancers	Brain Hippocampus Middle	brain
11	chr15:75320800-75322800	Enhancers	Fetal Muscle Leg	muscle
12	chr15:75320800-75323000	Enhancers	K562	blood
13	chr15:75320800-75323200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:75321000-75322400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr15:75321000-75322600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr15:75321000-75322800	Enhancers	Spleen	Spleen
17	chr15:75321000-75323000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr15:75321000-75323000	Enhancers	Brain Substantia Nigra	brain
19	chr15:75321000-75323000	Enhancers	Stomach Mucosa	stomach
20	chr15:75321200-75322800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:75321200-75323000	Genic enhancers	Fetal Stomach	stomach
22	chr15:75321400-75322400	Enhancers	Primary B cells from peripheral blood	blood
23	chr15:75321400-75322400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr15:75321400-75322600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:75321400-75322600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr15:75321400-75322800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:75321400-75322800	Enhancers	Brain Anterior Caudate	brain
28	chr15:75321400-75322800	Genic enhancers	Fetal Intestine Large	intestine
29	chr15:75321400-75323000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:75321400-75323000	Enhancers	Liver	Liver
31	chr15:75321400-75323000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr15:75321400-75323000	Enhancers	Duodenum Mucosa	Duodenum
33	chr15:75321400-75323200	Genic enhancers	Fetal Intestine Small	intestine
34	chr15:75321400-75326600	Enhancers	Primary B cells from cord blood	blood
35	chr15:75321600-75322200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr15:75321600-75322200	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr15:75321600-75322200	Genic enhancers	Dnd41	blood
38	chr15:75321600-75322400	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr15:75321600-75322400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:75321600-75322600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr15:75321600-75322600	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr15:75321600-75322600	Flanking Active TSS	Osteobl	bone
43	chr15:75321600-75322800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:75321600-75322800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr15:75321600-75324000	Enhancers	Lung	lung
46	chr15:75321600-75324800	Enhancers	HMEC	breast
47	chr15:75321800-75322200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:75321800-75322200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:75321800-75322200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr15:75321800-75322200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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