Variant report

Variant	rs8033925
Chromosome Location	chr15:75311959-75311960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75289096..75291038-chr15:75311135..75313518,2	K562	blood:
2	chr15:75197976..75200333-chr15:75311534..75313971,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178761	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12185077	0.86[EUR][1000 genomes]
rs12185078	0.83[AMR][1000 genomes]
rs12185102	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12324912	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12591119	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12898259	0.82[AFR][1000 genomes]
rs12901243	0.82[AFR][1000 genomes]
rs12903201	0.82[AFR][1000 genomes]
rs12910644	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12911421	0.86[EUR][1000 genomes]
rs12917120	0.80[AFR][1000 genomes]
rs13056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1867146	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1867150	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083731	0.82[AFR][1000 genomes]
rs2120019	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2120020	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289582	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2304903	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415253	0.82[AFR][1000 genomes]
rs2415254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2415255	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34237279	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34655806	0.82[AFR][1000 genomes]
rs34713999	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34835684	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35577967	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35736167	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35911108	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3850093	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5020842	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59094290	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60425110	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61166993	0.81[AFR][1000 genomes]
rs6495138	0.81[AFR][1000 genomes]
rs6495140	0.81[AFR][1000 genomes]
rs6495147	0.81[AFR][1000 genomes]
rs67324798	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67544533	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7162900	0.81[AFR][1000 genomes]
rs7167415	0.81[AFR][1000 genomes]
rs7168680	0.81[AFR][1000 genomes]
rs7173833	0.82[AFR][1000 genomes]
rs7174129	0.80[AFR][1000 genomes]
rs7175720	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7181942	0.81[AFR][1000 genomes]
rs7342591	0.81[AFR][1000 genomes]
rs7342601	0.81[AFR][1000 genomes]
rs8028632	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8030089	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8033837	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8036197	0.82[AFR][1000 genomes]
rs8036573	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8040169	0.82[AFR][1000 genomes]
rs8042409	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9672995	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9788648	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv527237	chr15:75305040-75321262	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
3	chr15:75290000-75316000	Weak transcription	Small Intestine	intestine
4	chr15:75293200-75315800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:75294600-75312200	Weak transcription	Adipose Nuclei	Adipose
6	chr15:75294600-75315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:75300400-75312200	Weak transcription	Spleen	Spleen
8	chr15:75301000-75315400	Weak transcription	Thymus	Thymus
9	chr15:75302000-75314000	Strong transcription	Fetal Intestine Small	intestine
10	chr15:75302200-75313200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:75302200-75313400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:75303600-75313800	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:75303800-75313800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:75303800-75314000	Strong transcription	Fetal Brain Female	brain
15	chr15:75304000-75315800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:75304000-75316000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:75304400-75313600	Strong transcription	Fetal Stomach	stomach
18	chr15:75304600-75313200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:75304800-75312600	Strong transcription	Brain Anterior Caudate	brain
20	chr15:75304800-75314000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:75305000-75315800	Weak transcription	Right Ventricle	heart
22	chr15:75306000-75312400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:75306200-75316000	Weak transcription	Fetal Brain Male	brain
24	chr15:75307800-75315800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:75308200-75315800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:75308600-75313800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:75308800-75312800	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr15:75309000-75312600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:75309000-75315800	Weak transcription	Placenta	Placenta
30	chr15:75309400-75312600	Strong transcription	Gastric	stomach
31	chr15:75309400-75315600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:75309800-75313600	Strong transcription	Brain Hippocampus Middle	brain
33	chr15:75310000-75312000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:75310000-75313600	Strong transcription	Brain Cingulate Gyrus	brain
35	chr15:75310000-75313600	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr15:75310000-75315200	Weak transcription	Brain Substantia Nigra	brain
37	chr15:75310200-75315200	Weak transcription	HepG2	liver
38	chr15:75310400-75315800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr15:75310800-75312000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:75310800-75312800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr15:75310800-75313600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
42	chr15:75310800-75314000	Strong transcription	Brain Germinal Matrix	brain
43	chr15:75311000-75312200	Weak transcription	Pancreas	Pancrea
44	chr15:75311000-75315600	Weak transcription	Liver	Liver
45	chr15:75311000-75315600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:75311200-75315800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:75311200-75315800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:75311400-75312400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:75311400-75312800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:75311400-75313200	Weak transcription	Primary hematopoietic stem cells	blood

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