Variant report

Variant	rs6754586
Chromosome Location	chr2:11002801-11002802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10991676..10994429-chr2:11002075..11003826,2	MCF-7	breast:
2	chr2:10992363..10995021-chr2:11001417..11003559,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4027209	1.00[AMR][1000 genomes]
rs7560967	1.00[AMR][1000 genomes]
rs7568523	1.00[AMR][1000 genomes]
rs7594143	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818988	chr2:10990198-11009610	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10989200-11003200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:10994200-11004000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:10998800-11003400	Weak transcription	Fetal Heart	heart
4	chr2:11000200-11003400	Enhancers	Right Atrium	heart
5	chr2:11000200-11004200	Enhancers	Right Ventricle	heart
6	chr2:11000200-11007000	Enhancers	Left Ventricle	heart
7	chr2:11000400-11007200	Enhancers	Fetal Brain Male	brain
8	chr2:11000600-11007200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:11000800-11006200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:11001600-11003400	Weak transcription	Spleen	Spleen
11	chr2:11001800-11004200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:11001800-11004800	Weak transcription	Fetal Brain Female	brain
13	chr2:11002000-11004000	Weak transcription	Primary T cells from cord blood	blood
14	chr2:11002000-11004200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:11002000-11005200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:11002200-11003400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr2:11002600-11003000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:11002600-11003000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:11002800-11004200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:11002800-11004400	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr2:11002800-11005400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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