Variant report

Variant	rs6756626
Chromosome Location	chr2:114033123-114033124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11903972	0.86[ASN][1000 genomes]
rs17043146	0.86[ASN][1000 genomes]
rs17043176	0.86[ASN][1000 genomes]
rs2277884	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73955192	0.86[ASN][1000 genomes]
rs73955197	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508162	chr2:113983043-114099966	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv535895	chr2:114015492-114037018	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv874901	chr2:114022569-114079565	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv998204	chr2:114023917-114075446	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114023200-114039800	Weak transcription	Gastric	stomach
2	chr2:114026600-114033400	Weak transcription	Lung	lung
3	chr2:114026600-114034400	Weak transcription	Pancreas	Pancrea
4	chr2:114030200-114033400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:114031600-114037000	Bivalent/Poised TSS	Fetal Kidney	kidney
6	chr2:114032200-114034400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:114032600-114035000	Weak transcription	Right Atrium	heart
8	chr2:114032800-114033400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:114032800-114034600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
10	chr2:114032800-114035800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
11	chr2:114033000-114033200	Bivalent Enhancer	Primary T cells from cord blood	blood
12	chr2:114033000-114033400	Bivalent Enhancer	Fetal Heart	heart
13	chr2:114033000-114034600	Bivalent Enhancer	Fetal Intestine Small	intestine
14	chr2:114033000-114034800	Bivalent Enhancer	Fetal Intestine Large	intestine
15	chr2:114033000-114035400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
16	chr2:114033000-114035800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr2:114033000-114036600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr2:114033000-114038000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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