Variant report

Variant	rs6757674
Chromosome Location	chr2:32036054-32036055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs6706181	1.00[AMR][1000 genomes]
rs6707764	1.00[AFR][1000 genomes]
rs6728551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6742921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72860967	1.00[AMR][1000 genomes]
rs7556776	1.00[AMR][1000 genomes]
rs7570819	1.00[AMR][1000 genomes]
rs7583370	1.00[AMR][1000 genomes]
rs7589321	1.00[AMR][1000 genomes]
rs7590836	1.00[AFR][1000 genomes]
rs7590909	1.00[AMR][1000 genomes]
rs7596764	1.00[AMR][1000 genomes]
rs7608303	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32031200-32037200	Weak transcription	Pancreas	Pancrea
2	chr2:32032600-32036400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:32034800-32038400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr2:32035000-32038200	Weak transcription	Psoas Muscle	Psoas
5	chr2:32035200-32037200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:32035400-32036600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:32035400-32037000	Enhancers	HepG2	liver
8	chr2:32035400-32037000	Enhancers	K562	blood
9	chr2:32035800-32037000	Weak transcription	HSMMtube	muscle
10	chr2:32036000-32036400	Enhancers	Fetal Muscle Trunk	muscle
11	chr2:32036000-32037200	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:32036000-32037800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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