Variant report

Variant	rs675809
Chromosome Location	chr5:71089756-71089757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10157212	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12125491	0.82[ASN][1000 genomes]
rs1596236	0.91[ASN][1000 genomes]
rs17160592	0.91[ASN][1000 genomes]
rs1867140	0.91[ASN][1000 genomes]
rs2031481	0.82[ASN][1000 genomes]
rs2477568	0.91[ASN][1000 genomes]
rs2477569	0.91[ASN][1000 genomes]
rs2477570	0.91[ASN][1000 genomes]
rs2584951	0.85[ASN][1000 genomes]
rs2584952	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985722	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3011803	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3011807	0.82[ASN][1000 genomes]
rs3011808	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3011809	0.91[ASN][1000 genomes]
rs3011810	0.91[ASN][1000 genomes]
rs35227958	0.84[ASN][1000 genomes]
rs4492676	0.87[ASN][1000 genomes]
rs4494193	0.90[ASN][1000 genomes]
rs4623760	0.88[ASN][1000 genomes]
rs471555	0.83[ASN][1000 genomes]
rs492243	0.91[ASN][1000 genomes]
rs493000	0.91[ASN][1000 genomes]
rs494122	0.91[ASN][1000 genomes]
rs4950301	0.91[ASN][1000 genomes]
rs4950302	0.91[ASN][1000 genomes]
rs4950303	0.91[ASN][1000 genomes]
rs4950354	0.91[ASN][1000 genomes]
rs4950355	0.91[ASN][1000 genomes]
rs4950356	0.91[ASN][1000 genomes]
rs4950359	0.91[ASN][1000 genomes]
rs4950360	0.91[ASN][1000 genomes]
rs4950362	0.91[ASN][1000 genomes]
rs4950364	0.91[ASN][1000 genomes]
rs499605	0.82[ASN][1000 genomes]
rs517201	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs524016	0.82[ASN][1000 genomes]
rs527874	0.82[ASN][1000 genomes]
rs527976	0.82[ASN][1000 genomes]
rs535827	0.91[ASN][1000 genomes]
rs554708	0.83[ASN][1000 genomes]
rs556976	0.91[ASN][1000 genomes]
rs56060937	0.91[ASN][1000 genomes]
rs56359955	0.88[ASN][1000 genomes]
rs573916	0.85[ASN][1000 genomes]
rs580852	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs584107	0.91[ASN][1000 genomes]
rs588140	0.85[ASN][1000 genomes]
rs59064267	0.91[ASN][1000 genomes]
rs602246	0.85[ASN][1000 genomes]
rs604106	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs604716	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs618575	0.91[ASN][1000 genomes]
rs618622	0.88[ASN][1000 genomes]
rs630630	0.96[ASN][1000 genomes]
rs632028	0.85[ASN][1000 genomes]
rs632334	0.91[ASN][1000 genomes]
rs632861	0.91[ASN][1000 genomes]
rs645347	0.85[ASN][1000 genomes]
rs648937	0.91[ASN][1000 genomes]
rs659728	0.91[ASN][1000 genomes]
rs660096	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs660604	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs661116	0.91[ASN][1000 genomes]
rs663740	0.85[ASN][1000 genomes]
rs671690	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs675782	0.91[ASN][1000 genomes]
rs676288	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs676773	0.83[ASN][1000 genomes]
rs678111	0.91[ASN][1000 genomes]
rs685741	0.91[ASN][1000 genomes]
rs719969	0.91[ASN][1000 genomes]
rs72704299	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706414	0.91[ASN][1000 genomes]
rs72706418	0.90[ASN][1000 genomes]
rs942689	0.91[ASN][1000 genomes]
rs9437999	0.83[ASN][1000 genomes]
rs9659068	0.91[ASN][1000 genomes]
rs9663073	0.90[ASN][1000 genomes]
rs976620	0.88[ASN][1000 genomes]
rs976621	0.88[ASN][1000 genomes]
rs976622	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830341	chr5:71057105-71221422	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71082600-71090000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:71082600-71103000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:71089600-71090000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chr5:71089600-71090800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr5:71089600-71090800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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