Variant report

Variant	rs6758324
Chromosome Location	chr2:72647093-72647094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10175824	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10176044	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10496183	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10496185	1.00[GIH][hapmap]
rs11674508	0.84[EUR][1000 genomes]
rs11680197	0.85[CEU][hapmap]
rs11681845	1.00[EUR][1000 genomes]
rs11689707	1.00[GIH][hapmap]
rs11884225	0.85[CEU][hapmap]
rs11887356	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11890482	0.85[CEU][hapmap]
rs11891573	0.85[CEU][hapmap]
rs11892598	1.00[GIH][hapmap]
rs11894521	0.85[CEU][hapmap]
rs11897200	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs11903453	0.82[CEU][hapmap]
rs11903908	0.85[CEU][hapmap]
rs11903912	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs1517179	0.85[CEU][hapmap]
rs17008057	0.85[CEU][hapmap]
rs17008082	0.85[CEU][hapmap]
rs17008143	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs17008208	1.00[GIH][hapmap]
rs17040320	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4507127	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs4508623	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs55727931	0.82[EUR][1000 genomes]
rs55728837	0.82[EUR][1000 genomes]
rs55840408	0.82[EUR][1000 genomes]
rs56153402	0.86[EUR][1000 genomes]
rs57286048	0.82[EUR][1000 genomes]
rs59881252	0.82[EUR][1000 genomes]
rs6546761	0.85[CEU][hapmap]
rs6546763	0.85[CEU][hapmap]
rs6546769	0.82[EUR][1000 genomes]
rs6546771	0.82[EUR][1000 genomes]
rs6707920	0.85[CEU][hapmap]
rs6711442	0.85[CEU][hapmap]
rs6712930	0.82[EUR][1000 genomes]
rs6712989	0.82[EUR][1000 genomes]
rs67166018	0.82[EUR][1000 genomes]
rs6717250	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6718052	0.82[EUR][1000 genomes]
rs6723136	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs6723380	0.85[CEU][hapmap]
rs6727580	0.85[CEU][hapmap]
rs6733532	0.85[CEU][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs6733538	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6734650	0.82[YRI][hapmap]
rs6735400	0.85[CEU][hapmap]
rs6743881	0.82[EUR][1000 genomes]
rs6746586	0.85[CEU][hapmap]
rs6755440	0.85[CEU][hapmap]
rs6756070	1.00[GIH][hapmap]
rs6758689	0.85[CEU][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs72841783	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72841784	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7420583	0.83[EUR][1000 genomes]
rs7424190	0.86[EUR][1000 genomes]
rs7557942	1.00[GIH][hapmap]
rs7559116	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs7571483	0.85[CEU][hapmap]
rs7571517	1.00[GIH][hapmap]
rs7575050	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs7583268	0.85[CEU][hapmap]
rs7596126	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7600134	0.82[EUR][1000 genomes]
rs7603342	0.82[EUR][1000 genomes]
rs7603535	0.82[EUR][1000 genomes]
rs7604296	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7604818	1.00[GIH][hapmap]
rs7607353	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs7608054	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs764766	1.00[GIH][hapmap]
rs9309465	0.85[CEU][hapmap]
rs9677947	0.80[EUR][1000 genomes]
rs9678682	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv2773	chr2:72603908-72649311	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72613800-72654000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72628400-72648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:72636200-72654000	Weak transcription	Aorta	Aorta
4	chr2:72638800-72655400	Weak transcription	Left Ventricle	heart
5	chr2:72641400-72649400	Weak transcription	Fetal Lung	lung
6	chr2:72641800-72654200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links