Variant report

Variant	rs6759711
Chromosome Location	chr2:37616932-37616933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37550683..37552401-chr2:37616317..37619162,3	MCF-7	breast:
2	chr2:37445368..37447696-chr2:37615687..37618666,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17020702	1.00[AMR][1000 genomes]
rs17020728	1.00[AMR][1000 genomes]
rs6739727	1.00[AMR][1000 genomes]
rs72864851	0.87[AMR][1000 genomes]
rs72864887	0.87[AMR][1000 genomes]
rs72866722	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37607400-37618200	Weak transcription	Right Atrium	heart
2	chr2:37613600-37618400	Enhancers	NHDF-Ad	bronchial
3	chr2:37613800-37617200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:37614000-37617400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:37614200-37617200	Enhancers	NHEK	skin
6	chr2:37614200-37617400	Enhancers	NHLF	lung
7	chr2:37614200-37618400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:37614200-37618600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:37614200-37618600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:37614400-37618400	Enhancers	HMEC	breast
11	chr2:37614600-37617000	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:37614600-37617200	Enhancers	HUVEC	blood vessel
13	chr2:37614800-37617200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:37614800-37623000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:37615000-37617000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:37615000-37617200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:37615000-37618800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr2:37615200-37617000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:37615200-37617000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:37615200-37617000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:37615200-37618600	Enhancers	Osteobl	bone
22	chr2:37615200-37619200	Enhancers	Primary B cells from peripheral blood	blood
23	chr2:37615400-37617000	Weak transcription	HSMMtube	muscle
24	chr2:37615400-37618600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr2:37615600-37617000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:37615600-37617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:37615600-37617400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:37615800-37618600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr2:37616000-37618000	Enhancers	Spleen	Spleen
30	chr2:37616000-37618400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr2:37616000-37619000	Enhancers	Primary B cells from cord blood	blood
32	chr2:37616000-37619800	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr2:37616200-37617000	Enhancers	Primary T cells from cord blood	blood
34	chr2:37616200-37617000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr2:37616200-37617000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr2:37616200-37617200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr2:37616200-37617200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr2:37616200-37618600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr2:37616200-37618800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr2:37616400-37617400	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr2:37616400-37618200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:37616400-37618600	Enhancers	Primary T cells fromperipheralblood	blood
43	chr2:37616600-37617000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr2:37616600-37617000	Enhancers	NH-A	brain
45	chr2:37616600-37617200	Enhancers	Duodenum Mucosa	Duodenum
46	chr2:37616600-37617400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:37616600-37617400	Enhancers	Right Ventricle	heart
48	chr2:37616600-37617600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr2:37616600-37617600	Enhancers	Lung	lung
50	chr2:37616600-37617600	Enhancers	Rectal Mucosa Donor 31	rectum

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