Variant report

Variant	rs72864851
Chromosome Location	chr2:37580840-37580841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37579913..37583058-chr2:37585203..37589963,5	K562	blood:
2	chr2:37574642..37576209-chr2:37580099..37581679,2	K562	blood:

Variant related genes	Relation type
ENSG00000115828	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17020702	0.87[AMR][1000 genomes]
rs17020728	0.87[AMR][1000 genomes]
rs6739727	0.87[AMR][1000 genomes]
rs6759711	0.87[AMR][1000 genomes]
rs72864887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866722	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37576800-37581400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:37577000-37590600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
5	chr2:37577600-37581600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:37577600-37588600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:37577800-37583200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:37577800-37583200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:37577800-37589000	Weak transcription	Left Ventricle	heart
10	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:37578400-37581600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:37578600-37584600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:37578600-37584600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:37578600-37601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:37578800-37602200	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:37579400-37581800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:37579400-37584200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:37579800-37592600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr2:37579800-37603000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr2:37580000-37581600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:37580200-37603400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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