Variant report

Variant	rs6762299
Chromosome Location	chr3:134530764-134530765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16842088	0.86[AFR][1000 genomes]
rs57941453	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62272388	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62272389	0.92[EUR][1000 genomes]
rs6439520	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134528000-134531200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134528200-134530800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:134528200-134531600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr3:134528400-134531200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:134529600-134541800	Weak transcription	Fetal Brain Female	brain
6	chr3:134529600-134542600	Weak transcription	Brain Germinal Matrix	brain
7	chr3:134529600-134546400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134529800-134530800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:134529800-134531000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:134529800-134531000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:134529800-134531600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:134530000-134531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:134530000-134531400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:134530000-134531400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:134530000-134533400	Weak transcription	Psoas Muscle	Psoas
16	chr3:134530000-134533600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:134530000-134535600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:134530000-134535600	Weak transcription	GM12878-XiMat	blood
19	chr3:134530000-134540800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:134530400-134534600	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:134530600-134530800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:134530600-134530800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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