Variant report

Variant	rs6439520
Chromosome Location	chr3:134511691-134511692
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10451866	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs11923284	0.87[CEU][hapmap]
rs11924725	0.84[ASN][1000 genomes]
rs11928724	0.84[ASN][1000 genomes]
rs1374812	0.82[ASN][1000 genomes]
rs57941453	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62272388	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62272389	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6762299	0.83[EUR][1000 genomes]
rs6766504	0.85[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134510400-134513600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:134511600-134512400	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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