Variant report
| Variant | rs6766504 |
|---|---|
| Chromosome Location | chr3:134502403-134502404 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ATF3 | chr3:134502179-134502416 | K562 | blood: | n/a | n/a |
| 2 | TBP | chr3:134502226-134502506 | K562 | blood: | n/a | n/a |
| 3 | EP300 | chr3:134502375-134502573 | GM12878 | blood: | n/a | n/a |
| 4 | JUND | chr3:134502263-134502448 | HepG2 | liver: | n/a | chr3:134502279-134502290 |
| 5 | TBP | chr3:134502265-134502482 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNA5SP141 | TF binding region |
| RNU6-1174P | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10451866 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11917704 | 0.92[ASN][1000 genomes] |
| rs11924725 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11928724 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13097181 | 0.85[ASN][1000 genomes] |
| rs1374812 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1447694 | 0.83[ASN][1000 genomes] |
| rs16842042 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34138051 | 0.92[ASN][1000 genomes] |
| rs34153537 | 0.92[ASN][1000 genomes] |
| rs34272915 | 0.92[ASN][1000 genomes] |
| rs58989811 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6439520 | 0.85[CEU][hapmap];1.00[JPT][hapmap] |
| rs71331776 | 0.92[ASN][1000 genomes] |
| rs745360 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877515 | chr3:134460368-134591138 | Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
