Variant report

Variant	rs34272915
Chromosome Location	chr3:134480503-134480504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11706266	0.81[EUR][1000 genomes]
rs11917704	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924725	0.87[ASN][1000 genomes]
rs11928724	0.87[ASN][1000 genomes]
rs13093017	0.83[EUR][1000 genomes]
rs13097181	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1374812	0.90[ASN][1000 genomes]
rs1447694	0.90[ASN][1000 genomes]
rs16842042	0.97[ASN][1000 genomes]
rs34138051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34153537	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58989811	0.92[ASN][1000 genomes]
rs6766504	0.92[ASN][1000 genomes]
rs71331776	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745360	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv518817	chr3:134478108-134486080	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34272915	TF	cis	substantia nigra	BrainEAC

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134479200-134481200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134479600-134480600	Enhancers	Fetal Muscle Leg	muscle
3	chr3:134479800-134480600	Enhancers	Fetal Heart	heart
4	chr3:134480000-134481400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:134480200-134481200	Enhancers	Psoas Muscle	Psoas
6	chr3:134480200-134481200	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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