Variant report

Variant	rs11917704
Chromosome Location	chr3:134486609-134486610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10451866	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11915986	0.86[AFR][1000 genomes]
rs11922047	1.00[YRI][hapmap]
rs11924725	0.87[ASN][1000 genomes]
rs11928724	0.87[ASN][1000 genomes]
rs13097181	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1374812	0.90[ASN][1000 genomes]
rs1447694	0.90[ASN][1000 genomes]
rs16842042	0.97[ASN][1000 genomes]
rs34138051	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34153537	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34272915	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58989811	0.92[ASN][1000 genomes]
rs6439518	0.86[AFR][1000 genomes]
rs6439520	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6766504	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6795746	0.86[AFR][1000 genomes]
rs71331776	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745360	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134484400-134489800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134486600-134487600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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