Variant report
| Variant | rs1447694 |
|---|---|
| Chromosome Location | chr3:134483259-134483260 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11917704 | 0.90[ASN][1000 genomes] |
| rs13097181 | 0.84[ASN][1000 genomes] |
| rs1374812 | 0.81[ASN][1000 genomes] |
| rs1374813 | 0.91[EUR][1000 genomes] |
| rs16842042 | 0.88[ASN][1000 genomes] |
| rs2138212 | 0.91[EUR][1000 genomes] |
| rs2400303 | 0.92[EUR][1000 genomes] |
| rs34138051 | 0.90[ASN][1000 genomes] |
| rs34153537 | 0.90[ASN][1000 genomes] |
| rs34272915 | 0.90[ASN][1000 genomes] |
| rs4955451 | 0.86[EUR][1000 genomes] |
| rs4955487 | 0.89[EUR][1000 genomes] |
| rs4955490 | 0.89[EUR][1000 genomes] |
| rs4955492 | 0.89[EUR][1000 genomes] |
| rs4955493 | 0.92[EUR][1000 genomes] |
| rs4955494 | 0.92[EUR][1000 genomes] |
| rs58989811 | 0.83[ASN][1000 genomes] |
| rs6439517 | 0.91[EUR][1000 genomes] |
| rs6766504 | 0.83[ASN][1000 genomes] |
| rs6779220 | 0.90[EUR][1000 genomes] |
| rs71331776 | 0.90[ASN][1000 genomes] |
| rs745360 | 0.88[ASN][1000 genomes] |
| rs935511 | 0.91[EUR][1000 genomes] |
| rs9825708 | 0.87[EUR][1000 genomes] |
| rs9825801 | 0.89[EUR][1000 genomes] |
| rs9828197 | 0.89[EUR][1000 genomes] |
| rs9845878 | 0.91[EUR][1000 genomes] |
| rs9875834 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877515 | chr3:134460368-134591138 | Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv518817 | chr3:134478108-134486080 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:134481200-134484400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
