Variant report

Variant	rs6762463
Chromosome Location	chr3:102119260-102119261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6771425	1.00[AFR][1000 genomes]
rs6801206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102118400-102120800	Enhancers	Hela-S3	cervix
2	chr3:102118600-102120400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:102118600-102120600	Enhancers	HMEC	breast
4	chr3:102118600-102121000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:102118800-102119600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:102118800-102121400	Enhancers	NHEK	skin
7	chr3:102119000-102120600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:102119000-102120600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:102119000-102120800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:102119000-102120800	Enhancers	HSMM	muscle
11	chr3:102119200-102119800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:102119200-102120000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:102119200-102120600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:102119200-102120800	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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