Variant report

Variant	rs6763624
Chromosome Location	chr3:111507065-111507066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:12903206..12905856-chr3:111505149..111507600,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095066	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10934102	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10934103	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13071304	0.92[EUR][1000 genomes]
rs13085147	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13090883	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17423699	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17424287	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs34307743	0.84[EUR][1000 genomes]
rs34444935	0.84[EUR][1000 genomes]
rs3922703	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3922705	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4234403	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4234405	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4308247	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs4349472	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4373040	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4405880	0.92[EUR][1000 genomes]
rs4416359	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4429600	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4438630	0.92[EUR][1000 genomes]
rs4464420	1.00[YRI][hapmap]
rs4546124	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4603931	1.00[YRI][hapmap]
rs4642091	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4645114	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4682058	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4682059	0.92[EUR][1000 genomes]
rs4682060	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4682061	0.92[EUR][1000 genomes]
rs4682304	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4682306	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4682307	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs4682308	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4682309	0.83[EUR][1000 genomes]
rs4682311	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4682315	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6438005	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs66499316	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6762439	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6768626	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs6777990	0.90[EUR][1000 genomes]
rs6780845	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs6782894	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6786443	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6791845	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6804906	0.92[EUR][1000 genomes]
rs6807045	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs68097220	0.94[EUR][1000 genomes]
rs7632963	0.92[EUR][1000 genomes]
rs7633037	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7637178	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs7640556	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7641533	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs9288929	0.92[EUR][1000 genomes]
rs9631450	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs9850851	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs9968124	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111496000-111514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111501600-111513600	Weak transcription	Pancreas	Pancrea
5	chr3:111501600-111518800	Weak transcription	A549	lung
6	chr3:111503400-111508800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:111503400-111508800	Weak transcription	Left Ventricle	heart
8	chr3:111504000-111519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:111504200-111515400	Weak transcription	Adipose Nuclei	Adipose
10	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:111506000-111507600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:111506000-111509000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:111506400-111507800	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:111506600-111507600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:111506800-111507200	Enhancers	HepG2	liver
16	chr3:111507000-111507600	Enhancers	Colon Smooth Muscle	Colon
17	chr3:111507000-111508600	Weak transcription	Fetal Heart	heart
18	chr3:111507000-111513000	Weak transcription	Fetal Stomach	stomach
19	chr3:111507000-111513600	Weak transcription	Liver	Liver

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