Variant report

Variant	rs68097220
Chromosome Location	chr3:111468087-111468088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10934102	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10934103	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13071304	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13085147	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13090883	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17423699	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17424287	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34307743	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34444935	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35320181	0.87[AMR][1000 genomes]
rs3922703	0.96[EUR][1000 genomes]
rs3922705	0.96[EUR][1000 genomes]
rs4234403	0.98[EUR][1000 genomes]
rs4234405	0.96[EUR][1000 genomes]
rs4308247	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4349472	0.96[EUR][1000 genomes]
rs4373040	1.00[EUR][1000 genomes]
rs4405880	0.98[EUR][1000 genomes]
rs4416359	0.96[EUR][1000 genomes]
rs4429600	0.88[EUR][1000 genomes]
rs4438630	0.98[EUR][1000 genomes]
rs4546124	0.96[EUR][1000 genomes]
rs4642091	0.98[EUR][1000 genomes]
rs4645114	0.96[EUR][1000 genomes]
rs4682058	0.98[EUR][1000 genomes]
rs4682059	0.98[EUR][1000 genomes]
rs4682060	0.98[EUR][1000 genomes]
rs4682061	0.98[EUR][1000 genomes]
rs4682304	0.98[EUR][1000 genomes]
rs4682306	0.98[EUR][1000 genomes]
rs4682307	0.98[EUR][1000 genomes]
rs4682308	0.98[EUR][1000 genomes]
rs4682309	0.89[EUR][1000 genomes]
rs4682311	0.96[EUR][1000 genomes]
rs4682315	0.96[EUR][1000 genomes]
rs6438005	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66499316	0.96[EUR][1000 genomes]
rs6762439	1.00[EUR][1000 genomes]
rs6763624	0.94[EUR][1000 genomes]
rs6768626	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6777990	0.96[EUR][1000 genomes]
rs6780845	0.98[EUR][1000 genomes]
rs6786443	0.96[EUR][1000 genomes]
rs6804906	0.98[EUR][1000 genomes]
rs6807045	0.98[EUR][1000 genomes]
rs7632963	0.98[EUR][1000 genomes]
rs7633037	1.00[EUR][1000 genomes]
rs7637178	0.98[EUR][1000 genomes]
rs7640556	1.00[EUR][1000 genomes]
rs7641533	0.98[EUR][1000 genomes]
rs9288929	0.98[EUR][1000 genomes]
rs9631450	0.98[EUR][1000 genomes]
rs9850851	0.98[EUR][1000 genomes]
rs9968124	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111463000-111469600	Weak transcription	Adipose Nuclei	Adipose
2	chr3:111463800-111468200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:111465000-111469200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:111465200-111468200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:111465200-111468400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:111465400-111469600	Weak transcription	A549	lung
7	chr3:111465400-111470400	Weak transcription	Hela-S3	cervix
8	chr3:111466200-111471400	Enhancers	NHEK	skin
9	chr3:111466400-111468200	Enhancers	HUVEC	blood vessel
10	chr3:111466400-111469400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:111466400-111469600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:111466400-111471200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:111466400-111471400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:111466600-111471000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:111466800-111471200	Enhancers	HSMM	muscle
16	chr3:111467000-111469000	Enhancers	Fetal Kidney	kidney
17	chr3:111467200-111468200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:111467200-111468200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:111467200-111468200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:111467200-111468200	Weak transcription	Osteobl	bone
21	chr3:111467200-111468800	Weak transcription	NHDF-Ad	bronchial
22	chr3:111467200-111469600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:111467200-111470600	Weak transcription	Small Intestine	intestine
24	chr3:111467400-111468400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:111467400-111468400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:111467400-111468400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:111467400-111468400	Weak transcription	HMEC	breast
28	chr3:111467400-111468600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:111467400-111468800	Weak transcription	Liver	Liver
30	chr3:111467400-111469000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:111467400-111470200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:111467400-111470600	Weak transcription	NH-A	brain
33	chr3:111467400-111470800	Weak transcription	Stomach Mucosa	stomach
34	chr3:111467800-111469400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:111467800-111469400	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr3:111467800-111469400	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:111467800-111469600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr3:111467800-111471400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr3:111468000-111468400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:111468000-111468400	Active TSS	Stomach Smooth Muscle	stomach
41	chr3:111468000-111469000	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr3:111468000-111471200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr3:111468000-111471400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr3:111468000-111471400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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