Variant report

Variant	rs6764154
Chromosome Location	chr3:23922042-23922043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11717862	0.82[EUR][1000 genomes]
rs12631785	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13091509	0.86[EUR][1000 genomes]
rs13095392	0.80[EUR][1000 genomes]
rs4024642	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4025822	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4131403	0.83[EUR][1000 genomes]
rs4241514	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4241517	0.89[EUR][1000 genomes]
rs4241520	0.81[EUR][1000 genomes]
rs4321479	0.82[EUR][1000 genomes]
rs4546101	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4589882	0.83[EUR][1000 genomes]
rs4619734	0.82[EUR][1000 genomes]
rs4858094	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858095	0.83[EUR][1000 genomes]
rs4858098	0.81[EUR][1000 genomes]
rs4858549	0.80[ASN][1000 genomes]
rs4858550	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4858551	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4858553	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4858567	0.81[EUR][1000 genomes]
rs6550804	0.80[ASN][1000 genomes]
rs6550807	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6550815	0.89[EUR][1000 genomes]
rs6550819	0.85[EUR][1000 genomes]
rs6550823	0.80[EUR][1000 genomes]
rs6762238	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6779476	0.83[EUR][1000 genomes]
rs6790557	0.81[EUR][1000 genomes]
rs6794922	0.82[EUR][1000 genomes]
rs6807856	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7371944	0.81[EUR][1000 genomes]
rs7431301	0.81[EUR][1000 genomes]
rs7615009	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7615255	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626431	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7627709	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7648931	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7651185	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9842907	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9845287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9863320	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9882735	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23901200-23942000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:23901800-23928800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:23901800-23935600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:23903400-23929400	Weak transcription	Dnd41	blood
5	chr3:23904800-23930800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:23906600-23931800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:23907600-23922200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:23907600-23940200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:23908000-23922400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:23908000-23923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:23908000-23931600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:23908000-23935600	Weak transcription	Fetal Kidney	kidney
13	chr3:23908000-23935600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:23908000-23940200	Weak transcription	Gastric	stomach
15	chr3:23908200-23930400	Weak transcription	HepG2	liver
16	chr3:23911800-23922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:23912000-23923400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:23912200-23930200	Weak transcription	Liver	Liver
19	chr3:23914000-23924000	Weak transcription	Fetal Intestine Large	intestine
20	chr3:23915800-23923200	Weak transcription	Esophagus	oesophagus
21	chr3:23916000-23923400	Weak transcription	Fetal Brain Female	brain
22	chr3:23916000-23934000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:23916000-23950200	Weak transcription	Aorta	Aorta
24	chr3:23916200-23948800	Weak transcription	Colonic Mucosa	Colon
25	chr3:23916600-23932800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:23916800-23922200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:23917200-23931600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:23917600-23931400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:23918600-23931600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:23918800-23928800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:23919000-23923200	Weak transcription	Spleen	Spleen
32	chr3:23919000-23940000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:23919200-23922400	Weak transcription	Fetal Thymus	thymus
34	chr3:23919200-23923400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:23919200-23930200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:23919200-23931000	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:23919200-23931400	Weak transcription	Fetal Lung	lung
38	chr3:23919200-23935800	Weak transcription	Psoas Muscle	Psoas
39	chr3:23919200-23938400	Weak transcription	Ovary	ovary
40	chr3:23919200-23940200	Weak transcription	Pancreas	Pancrea
41	chr3:23919400-23923200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:23919400-23923200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr3:23919400-23926400	Weak transcription	HMEC	breast
44	chr3:23919400-23926800	Weak transcription	A549	lung
45	chr3:23919400-23928600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:23919400-23930400	Weak transcription	Brain Hippocampus Middle	brain
47	chr3:23919400-23930400	Weak transcription	NHEK	skin
48	chr3:23919400-23930600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:23919400-23931600	Weak transcription	Brain Anterior Caudate	brain
50	chr3:23919400-23932400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links