Variant report

Variant	rs7651185
Chromosome Location	chr3:23909658-23909659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23908978..23911720-chr3:23917649..23919406,2	K562	blood:
2	chr3:23849301..23852116-chr3:23908419..23911310,3	MCF-7	breast:
3	chr3:23850663..23852864-chr3:23907754..23910540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170142	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1026407	0.90[JPT][hapmap]
rs11707828	1.00[JPT][hapmap]
rs12631785	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1471060	1.00[JPT][hapmap]
rs1473380	0.86[JPT][hapmap];0.81[MEX][hapmap]
rs1473381	0.86[JPT][hapmap]
rs4024642	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4025822	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4241514	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4241517	0.87[CEU][hapmap];0.88[GIH][hapmap];0.84[TSI][hapmap]
rs4321479	0.83[CEU][hapmap];0.80[GIH][hapmap];0.82[TSI][hapmap]
rs4546101	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4589882	0.83[CEU][hapmap];0.80[GIH][hapmap];0.87[MKK][hapmap];0.84[TSI][hapmap]
rs4858094	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4858095	0.82[CEU][hapmap];0.80[GIH][hapmap];0.84[TSI][hapmap]
rs4858098	0.82[CEU][hapmap]
rs4858548	0.82[ASN][1000 genomes]
rs4858549	0.83[ASN][1000 genomes]
rs4858550	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4858551	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4858553	0.91[ASW][hapmap];0.91[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4858567	0.83[CEU][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap]
rs5023610	0.83[CEU][hapmap]
rs6550804	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6550807	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6550823	0.83[CEU][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap]
rs6762238	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6764154	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6779476	0.84[TSI][hapmap]
rs6794922	0.83[CEU][hapmap];0.80[GIH][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap]
rs6807856	0.91[ASW][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.87[LWK][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap]
rs7371944	0.87[MKK][hapmap];0.84[TSI][hapmap]
rs7615009	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7615255	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7626431	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7627709	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7648931	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842907	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9845287	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9863320	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9869299	0.91[JPT][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23901200-23914800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:23901200-23915400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:23901200-23915400	Weak transcription	HSMM	muscle
4	chr3:23901200-23942000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:23901400-23915200	Weak transcription	NHEK	skin
6	chr3:23901800-23928800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:23901800-23935600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:23903400-23929400	Weak transcription	Dnd41	blood
9	chr3:23904000-23918200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:23904800-23930800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:23906400-23922000	Weak transcription	Primary T cells from cord blood	blood
12	chr3:23906600-23931800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:23907000-23918400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:23907000-23920400	Weak transcription	Primary B cells from cord blood	blood
15	chr3:23907200-23910400	Weak transcription	Fetal Brain Male	brain
16	chr3:23907200-23915400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:23907400-23915400	Weak transcription	HMEC	breast
18	chr3:23907600-23911200	Weak transcription	Thymus	Thymus
19	chr3:23907600-23917600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:23907600-23920000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:23907600-23922200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:23907600-23940200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:23907800-23910400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:23907800-23911000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:23907800-23911600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:23908000-23911000	Weak transcription	Fetal Thymus	thymus
27	chr3:23908000-23911000	Weak transcription	Left Ventricle	heart
28	chr3:23908000-23911000	Weak transcription	Right Atrium	heart
29	chr3:23908000-23911000	Weak transcription	Right Ventricle	heart
30	chr3:23908000-23911400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:23908000-23911400	Weak transcription	Lung	lung
32	chr3:23908000-23911600	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:23908000-23911600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:23908000-23911600	Weak transcription	K562	blood
35	chr3:23908000-23911800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:23908000-23912000	Enhancers	Fetal Heart	heart
37	chr3:23908000-23914600	Weak transcription	Small Intestine	intestine
38	chr3:23908000-23915000	Weak transcription	Ovary	ovary
39	chr3:23908000-23915400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:23908000-23915400	Weak transcription	Aorta	Aorta
41	chr3:23908000-23915400	Weak transcription	NH-A	brain
42	chr3:23908000-23915600	Weak transcription	Esophagus	oesophagus
43	chr3:23908000-23916200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:23908000-23918200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:23908000-23918400	Weak transcription	Spleen	Spleen
46	chr3:23908000-23918600	Weak transcription	Stomach Mucosa	stomach
47	chr3:23908000-23918800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:23908000-23922400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr3:23908000-23923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:23908000-23931600	Weak transcription	Duodenum Mucosa	Duodenum

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