Variant report

Variant	rs6764227
Chromosome Location	chr3:160012068-160012069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160011686..160013394-chr3:160115179..160116949,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11929258	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12106837	1.00[EUR][1000 genomes]
rs12107576	1.00[EUR][1000 genomes]
rs16831149	1.00[ASN][1000 genomes]
rs2275150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278848	1.00[EUR][1000 genomes]
rs3773370	1.00[EUR][1000 genomes]
rs56804721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56992472	1.00[EUR][1000 genomes]
rs57094479	1.00[EUR][1000 genomes]
rs57310422	1.00[EUR][1000 genomes]
rs58993492	1.00[EUR][1000 genomes]
rs59308952	1.00[EUR][1000 genomes]
rs60535227	1.00[EUR][1000 genomes]
rs6441309	1.00[EUR][1000 genomes]
rs6441310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773833	1.00[EUR][1000 genomes]
rs6773856	1.00[EUR][1000 genomes]
rs6793718	1.00[EUR][1000 genomes]
rs6802789	1.00[EUR][1000 genomes]
rs6808628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154538	0.90[ASN][1000 genomes]
rs73875248	1.00[ASN][1000 genomes]
rs7635305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159971400-160035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:159974200-160038000	Weak transcription	Fetal Brain Male	brain
3	chr3:159974800-160014400	Weak transcription	HSMM	muscle
4	chr3:159975000-160025600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:159975000-160028000	Weak transcription	Brain Anterior Caudate	brain
6	chr3:159975000-160034200	Weak transcription	Fetal Intestine Large	intestine
7	chr3:159975200-160036000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:159975600-160046600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:159976200-160039000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:159977800-160014400	Weak transcription	NHDF-Ad	bronchial
11	chr3:159977800-160073000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:159981200-160038200	Weak transcription	Esophagus	oesophagus
13	chr3:159983400-160014200	Weak transcription	HSMMtube	muscle
14	chr3:159983600-160020400	Weak transcription	Brain Germinal Matrix	brain
15	chr3:159984600-160014600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:159984800-160038200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr3:159986400-160024800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:159987000-160014400	Weak transcription	NHLF	lung
19	chr3:159988200-160030200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:159991000-160024800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:159992400-160014000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:159992400-160035400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:159992600-160022600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:159992800-160014400	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:159992800-160026400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:159992800-160033400	Weak transcription	Fetal Kidney	kidney
27	chr3:159992800-160036400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:159992800-160036600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:159993000-160019600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:159993600-160016800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:159994600-160025000	Weak transcription	Dnd41	blood
32	chr3:159995000-160014200	Weak transcription	Osteobl	bone
33	chr3:159995000-160024400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:159995200-160019200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:159995400-160034200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr3:159996400-160037000	Weak transcription	Primary B cells from cord blood	blood
37	chr3:159996600-160038400	Weak transcription	Brain Hippocampus Middle	brain
38	chr3:159996800-160013000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:159996800-160020000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:159996800-160033600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:159997000-160033800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:159997200-160037200	Weak transcription	Brain Angular Gyrus	brain
43	chr3:159997200-160046600	Weak transcription	Fetal Lung	lung
44	chr3:159997600-160035600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:159999200-160024800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr3:159999600-160027000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:159999800-160033800	Weak transcription	Aorta	Aorta
48	chr3:159999800-160034000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:159999800-160035400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:159999800-160047800	Weak transcription	Lung	lung

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