Variant report

Variant	rs60535227
Chromosome Location	chr3:159815406-159815407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16830909	1.00[EUR][1000 genomes]
rs16830925	1.00[EUR][1000 genomes]
rs2275150	1.00[EUR][1000 genomes]
rs56804721	1.00[EUR][1000 genomes]
rs56992472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57094479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57310422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58993492	1.00[EUR][1000 genomes]
rs59308952	1.00[EUR][1000 genomes]
rs6441309	1.00[EUR][1000 genomes]
rs6441310	1.00[EUR][1000 genomes]
rs6764227	1.00[EUR][1000 genomes]
rs6793718	1.00[EUR][1000 genomes]
rs6795435	1.00[EUR][1000 genomes]
rs6808628	1.00[EUR][1000 genomes]
rs73015868	1.00[ASN][1000 genomes]
rs73025797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv819439	chr3:159800647-159815768	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3358384	chr3:159812458-159816056	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159807000-159825000	Weak transcription	Pancreas	Pancrea
2	chr3:159812800-159816400	Weak transcription	HepG2	liver
3	chr3:159814600-159815800	Enhancers	Gastric	stomach
4	chr3:159815000-159816400	Enhancers	Esophagus	oesophagus
5	chr3:159815200-159817000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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