Variant report

Variant	rs16830909
Chromosome Location	chr3:159646672-159646673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159645783..159648230-chr3:159658331..159660835,2	MCF-7	breast:
2	chr3:159646129..159648856-chr3:159654448..159656176,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16830925	1.00[EUR][1000 genomes]
rs56992472	1.00[EUR][1000 genomes]
rs57094479	1.00[EUR][1000 genomes]
rs57310422	1.00[EUR][1000 genomes]
rs60535227	1.00[EUR][1000 genomes]
rs6795435	1.00[EUR][1000 genomes]
rs73025797	1.00[EUR][1000 genomes]
rs7615031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv4086	chr3:159612521-159657780	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159642400-159647000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:159643200-159647000	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:159644200-159646800	Enhancers	HSMM	muscle
4	chr3:159644600-159648000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:159644800-159648000	Enhancers	NHDF-Ad	bronchial
6	chr3:159644800-159648000	Enhancers	NHLF	lung
7	chr3:159645000-159646800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:159645000-159646800	Enhancers	Osteobl	bone
9	chr3:159645000-159647800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:159645000-159648200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:159645000-159648600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:159645200-159647800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:159645200-159648000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:159645200-159648000	Enhancers	HMEC	breast
15	chr3:159645200-159648000	Enhancers	HSMMtube	muscle
16	chr3:159645400-159646800	Enhancers	Stomach Smooth Muscle	stomach
17	chr3:159645400-159647000	Enhancers	NH-A	brain
18	chr3:159645400-159647400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:159645400-159647800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:159645400-159647800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:159645400-159647800	Enhancers	NHEK	skin
22	chr3:159645400-159648000	Enhancers	Placenta	Placenta
23	chr3:159645400-159648200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:159645400-159648600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:159645600-159646800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:159645600-159646800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr3:159645600-159647200	Enhancers	Colon Smooth Muscle	Colon
28	chr3:159645600-159647600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:159645600-159647600	Enhancers	Brain Hippocampus Middle	brain
30	chr3:159645600-159647800	Enhancers	A549	lung
31	chr3:159645600-159648000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:159645600-159648000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr3:159645800-159646800	Enhancers	Hela-S3	cervix
34	chr3:159645800-159647000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:159645800-159647200	Enhancers	GM12878-XiMat	blood
36	chr3:159645800-159647400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr3:159645800-159647800	Enhancers	Rectal Smooth Muscle	rectum
38	chr3:159645800-159648000	Enhancers	Primary hematopoietic stem cells	blood
39	chr3:159645800-159648000	Enhancers	HUVEC	blood vessel
40	chr3:159646000-159647200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:159646000-159647200	Enhancers	Brain Substantia Nigra	brain
42	chr3:159646000-159647800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:159646000-159648000	Enhancers	Left Ventricle	heart
44	chr3:159646200-159647200	Weak transcription	Adipose Nuclei	Adipose
45	chr3:159646200-159647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:159646200-159648200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr3:159646400-159646800	Weak transcription	Primary B cells from cord blood	blood
48	chr3:159646400-159646800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr3:159646400-159647000	Enhancers	Aorta	Aorta
50	chr3:159646400-159648000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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