Variant report

Variant	rs7615031
Chromosome Location	chr3:159632627-159632628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16830909	1.00[EUR][1000 genomes]
rs16830925	1.00[EUR][1000 genomes]
rs56248492	1.00[AMR][1000 genomes]
rs57094479	1.00[EUR][1000 genomes]
rs6795435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv4086	chr3:159612521-159657780	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159617000-159645000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159629800-159637800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:159629800-159644200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:159629800-159646400	Weak transcription	Aorta	Aorta
5	chr3:159631400-159632800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:159631600-159632800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:159631600-159633200	Enhancers	Osteobl	bone
8	chr3:159631800-159632800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:159631800-159637400	Weak transcription	A549	lung
10	chr3:159632000-159633800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:159632200-159637200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:159632400-159636400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:159632400-159641800	Weak transcription	HSMMtube	muscle
14	chr3:159632400-159644800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:159632600-159632800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:159632600-159636200	Weak transcription	NHDF-Ad	bronchial
17	chr3:159632600-159636800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:159632600-159638000	Weak transcription	HSMM	muscle
19	chr3:159632600-159645400	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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