Variant report

Variant	rs16830925
Chromosome Location	chr3:159665989-159665990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16830909	1.00[EUR][1000 genomes]
rs56992472	1.00[EUR][1000 genomes]
rs57094479	1.00[EUR][1000 genomes]
rs57310422	1.00[EUR][1000 genomes]
rs60535227	1.00[EUR][1000 genomes]
rs6795435	1.00[EUR][1000 genomes]
rs73025797	1.00[EUR][1000 genomes]
rs7615031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159658600-159672200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:159660600-159666000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:159662200-159668200	Enhancers	NHDF-Ad	bronchial
4	chr3:159663000-159666200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:159663800-159667200	Enhancers	NHLF	lung
6	chr3:159664000-159666000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:159664200-159667400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:159664400-159667200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:159664400-159667200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:159664400-159667400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:159664400-159667400	Enhancers	Osteobl	bone
12	chr3:159664800-159666000	Enhancers	NH-A	brain
13	chr3:159664800-159666200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:159665200-159666800	Enhancers	HSMM	muscle
15	chr3:159665400-159666600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:159665800-159666600	Weak transcription	HSMMtube	muscle
17	chr3:159665800-159666800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:159665800-159667000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr3:159665800-159667400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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