Variant report

Variant	rs676468
Chromosome Location	chr15:58073256-58073257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs502002	0.88[YRI][hapmap]
rs527693	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs584049	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58060000-58073800	Weak transcription	Right Atrium	heart
2	chr15:58069000-58073800	Enhancers	Primary T cells from cord blood	blood
3	chr15:58069000-58076000	Weak transcription	Fetal Lung	lung
4	chr15:58070200-58075200	Weak transcription	Lung	lung
5	chr15:58071800-58073800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:58071800-58075200	Weak transcription	HMEC	breast
7	chr15:58071800-58077200	Enhancers	NHDF-Ad	bronchial
8	chr15:58072000-58074000	Weak transcription	NHEK	skin
9	chr15:58072000-58075000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:58072200-58073400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:58072600-58076200	Weak transcription	Fetal Intestine Large	intestine
12	chr15:58073000-58074600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:58073200-58073600	Enhancers	Fetal Muscle Trunk	muscle
14	chr15:58073200-58074000	Enhancers	Fetal Muscle Leg	muscle
15	chr15:58073200-58074000	Flanking Active TSS	Fetal Thymus	thymus
16	chr15:58073200-58074400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:58073200-58074800	Flanking Active TSS	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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