Variant report

Variant	rs6764896
Chromosome Location	chr3:21440128-21440129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:21434215..21436621-chr3:21438277..21440578,2	MCF-7	breast:
2	chr3:21439366..21441034-chr3:21442770..21445274,2	K562	blood:
3	chr3:21439015..21441958-chr3:21447248..21448760,2	K562	blood:
4	chr3:21438293..21442012-chr3:21443506..21445713,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11926632	1.00[ASN][1000 genomes]
rs12488141	1.00[ASN][1000 genomes]
rs17008659	1.00[ASN][1000 genomes]
rs2134133	1.00[ASN][1000 genomes]
rs2134134	1.00[ASN][1000 genomes]
rs2335512	1.00[ASN][1000 genomes]
rs28513933	1.00[ASN][1000 genomes]
rs341831	0.84[EUR][1000 genomes]
rs341832	0.81[EUR][1000 genomes]
rs341857	0.82[EUR][1000 genomes]
rs341859	0.84[EUR][1000 genomes]
rs341860	0.82[EUR][1000 genomes]
rs341862	0.90[EUR][1000 genomes]
rs395247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs424105	0.90[EUR][1000 genomes]
rs433667	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809766	1.00[ASN][1000 genomes]
rs9810099	1.00[ASN][1000 genomes]
rs9848242	1.00[ASN][1000 genomes]
rs9874669	1.00[ASN][1000 genomes]
rs9883468	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21433600-21447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21435400-21451800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links