Variant report

Variant	rs6768491
Chromosome Location	chr3:155248145-155248146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1356604	1.00[EUR][1000 genomes]
rs17414151	1.00[EUR][1000 genomes]
rs56122616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58511995	1.00[EUR][1000 genomes]
rs73005140	1.00[EUR][1000 genomes]
rs73013284	1.00[EUR][1000 genomes]
rs73873138	1.00[EUR][1000 genomes]
rs7650465	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:155231200-155253000	Weak transcription	A549	lung
6	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
7	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
9	chr3:155232400-155250400	Weak transcription	Gastric	stomach
10	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
11	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:155238000-155249000	Strong transcription	Dnd41	blood
14	chr3:155239800-155248200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:155241800-155248600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:155241800-155248800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:155241800-155248800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:155241800-155249000	Weak transcription	Fetal Thymus	thymus
19	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:155242000-155248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:155244600-155248800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:155244800-155249800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:155244800-155258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:155245000-155249000	Weak transcription	Thymus	Thymus
25	chr3:155247200-155248600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:155247200-155253000	Weak transcription	Rectal Mucosa Donor 29	rectum

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