Variant report

Variant	rs67686852
Chromosome Location	chr7:149432953-149432954
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:149360985..149362815-chr7:149431855..149434216,2	K562	blood:
2	chr7:149426080..149429363-chr7:149431057..149433196,3	MCF-7	breast:
3	chr7:149411516..149414447-chr7:149432476..149435059,2	MCF-7	breast:
4	chr7:149432446..149434254-chr7:149442408..149444018,2	MCF-7	breast:
5	chr7:149414970..149421836-chr7:149428511..149433811,13	K562	blood:
6	chr7:149429733..149431418-chr7:149431815..149433913,2	K562	blood:
7	chr7:149425259..149429446-chr7:149430985..149435118,9	K562	blood:
8	chr7:149429264..149431556-chr7:149431725..149434277,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133619	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs740136	0.95[ASN][1000 genomes]
rs855725	0.90[ASN][1000 genomes]
rs855726	0.90[ASN][1000 genomes]
rs855750	0.94[ASN][1000 genomes]
rs855752	0.93[ASN][1000 genomes]
rs855754	0.95[ASN][1000 genomes]
rs855755	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv465199	chr7:149398065-149462621	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv608979	chr7:149398065-149462621	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv831184	chr7:149424835-149600093	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149412800-149438800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:149413000-149433200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:149413200-149433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:149413400-149433400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:149414800-149438800	Weak transcription	Fetal Brain Male	brain
6	chr7:149417600-149438800	Weak transcription	GM12878-XiMat	blood
7	chr7:149418000-149438800	Weak transcription	A549	lung
8	chr7:149420200-149439200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:149420200-149439400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:149422200-149433400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:149423400-149433000	Weak transcription	NHLF	lung
12	chr7:149423400-149439200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:149425200-149439200	Weak transcription	Fetal Kidney	kidney
14	chr7:149425400-149433400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:149426600-149439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:149427000-149433200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:149427000-149433400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:149427000-149433400	Weak transcription	K562	blood
19	chr7:149427000-149439200	Weak transcription	Fetal Lung	lung
20	chr7:149427200-149438800	Weak transcription	Liver	Liver
21	chr7:149427200-149438800	Weak transcription	Right Atrium	heart
22	chr7:149427800-149438800	Weak transcription	Psoas Muscle	Psoas
23	chr7:149428800-149433200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:149429000-149439000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:149429600-149433200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:149430000-149433600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:149430000-149439600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:149430200-149433600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:149430200-149439400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:149430400-149433000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:149430400-149433000	Weak transcription	Fetal Thymus	thymus
32	chr7:149430400-149438600	Weak transcription	Brain Substantia Nigra	brain
33	chr7:149430400-149438800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:149430600-149433800	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:149430600-149439000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:149430800-149433200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:149430800-149439200	Weak transcription	Aorta	Aorta
38	chr7:149431000-149433000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:149431000-149433200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr7:149431000-149433800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:149431000-149438600	Weak transcription	Brain Angular Gyrus	brain
42	chr7:149431000-149438800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:149431000-149439000	Weak transcription	Gastric	stomach
44	chr7:149431000-149439200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:149431200-149433800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:149431200-149438800	Weak transcription	Pancreas	Pancrea
47	chr7:149431200-149439200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr7:149431400-149433200	Weak transcription	Thymus	Thymus
49	chr7:149431400-149438800	Weak transcription	Colonic Mucosa	Colon
50	chr7:149431600-149433000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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