Variant report

Variant	rs855752
Chromosome Location	chr7:149415333-149415334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:149413328..149416314-chr7:149417568..149419723,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133619	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs67686852	0.93[ASN][1000 genomes]
rs740136	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs855725	0.84[ASN][1000 genomes]
rs855726	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855745	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs855747	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs855748	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs855750	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs855754	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs855755	0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv465199	chr7:149398065-149462621	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv608979	chr7:149398065-149462621	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149412800-149416800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr7:149412800-149417000	Weak transcription	Liver	Liver
3	chr7:149412800-149417400	Weak transcription	Fetal Intestine Large	intestine
4	chr7:149412800-149418000	Weak transcription	Aorta	Aorta
5	chr7:149412800-149418600	Weak transcription	Primary B cells from cord blood	blood
6	chr7:149412800-149421400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:149412800-149438800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:149413000-149415600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:149413000-149416000	Weak transcription	Primary T cells from cord blood	blood
10	chr7:149413000-149416000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:149413000-149416000	Weak transcription	Fetal Intestine Small	intestine
12	chr7:149413000-149416000	Weak transcription	A549	lung
13	chr7:149413000-149416000	Weak transcription	NHLF	lung
14	chr7:149413000-149416200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:149413000-149416600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:149413000-149417200	Weak transcription	HSMMtube	muscle
17	chr7:149413000-149417400	Weak transcription	Thymus	Thymus
18	chr7:149413000-149418000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:149413000-149418000	Weak transcription	Small Intestine	intestine
20	chr7:149413000-149418200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:149413000-149418200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:149413000-149424000	Weak transcription	Fetal Kidney	kidney
23	chr7:149413000-149433200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:149413200-149416000	Weak transcription	Brain Substantia Nigra	brain
25	chr7:149413200-149416000	Weak transcription	Ovary	ovary
26	chr7:149413200-149416000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:149413200-149416400	Weak transcription	Osteobl	bone
28	chr7:149413200-149417800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:149413200-149417800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr7:149413200-149418000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:149413200-149418000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:149413200-149418400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr7:149413200-149421800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr7:149413200-149426200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr7:149413200-149432000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:149413200-149433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr7:149413400-149415400	Enhancers	Left Ventricle	heart
38	chr7:149413400-149416000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:149413400-149416000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:149413400-149416000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr7:149413400-149416000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:149413400-149416000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:149413400-149416000	Weak transcription	Lung	lung
44	chr7:149413400-149416000	Weak transcription	NH-A	brain
45	chr7:149413400-149416000	Weak transcription	NHDF-Ad	bronchial
46	chr7:149413400-149416200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:149413400-149416400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:149413400-149417000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr7:149413400-149417000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:149413400-149417000	Weak transcription	Gastric	stomach

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