Variant report

Variant	rs67688669
Chromosome Location	chr15:58860565-58860566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58860510..58864232-chr15:58873033..58877399,5	K562	blood:
2	chr15:58858333..58860750-chr15:58870905..58872413,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10152558	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10851637	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11858020	0.80[EUR][1000 genomes]
rs17269397	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1869132	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67897154	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8027708	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8030893	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1050231	chr15:58848727-58863526	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1043560	chr15:58851369-58863526	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58853200-58865000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:58854600-58864200	Weak transcription	HepG2	liver
3	chr15:58854800-58868400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:58857800-58860600	Weak transcription	Fetal Kidney	kidney
5	chr15:58857800-58862800	Weak transcription	Colonic Mucosa	Colon
6	chr15:58859000-58865600	Weak transcription	Liver	Liver
7	chr15:58859800-58861000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:58859800-58861200	Enhancers	K562	blood
9	chr15:58860200-58860600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:58860200-58860800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:58860200-58860800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr15:58860200-58860800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr15:58860200-58860800	Enhancers	Stomach Mucosa	stomach
14	chr15:58860200-58860800	Enhancers	HMEC	breast
15	chr15:58860200-58861000	Enhancers	HUVEC	blood vessel
16	chr15:58860200-58861000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr15:58860200-58861000	Enhancers	NHEK	skin
18	chr15:58860200-58861200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr15:58860200-58861200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr15:58860200-58861200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:58860400-58860600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:58860400-58860600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:58860400-58860600	Enhancers	Fetal Heart	heart
24	chr15:58860400-58860600	Enhancers	Pancreas	Pancrea
25	chr15:58860400-58860800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:58860400-58860800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr15:58860400-58860800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr15:58860400-58860800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:58860400-58860800	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr15:58860400-58860800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:58860400-58860800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:58860400-58860800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:58860400-58860800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:58860400-58860800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:58860400-58860800	Enhancers	Duodenum Mucosa	Duodenum
36	chr15:58860400-58860800	Enhancers	Fetal Thymus	thymus
37	chr15:58860400-58860800	Enhancers	Left Ventricle	heart
38	chr15:58860400-58860800	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr15:58860400-58860800	Enhancers	Thymus	Thymus
40	chr15:58860400-58860800	Enhancers	A549	lung
41	chr15:58860400-58861000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:58860400-58861000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:58860400-58861000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr15:58860400-58861000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr15:58860400-58861000	Enhancers	Dnd41	blood
46	chr15:58860400-58861200	Enhancers	Primary T cells from cord blood	blood
47	chr15:58860400-58861200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr15:58860400-58861200	Enhancers	Brain Anterior Caudate	brain
49	chr15:58860400-58861200	Enhancers	GM12878-XiMat	blood

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