Variant report

Variant	rs17269397
Chromosome Location	chr15:58857378-58857379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58857358..58859219-chr15:58863584..58865207,2	K562	blood:
2	chr15:58850686..58852786-chr15:58855873..58857553,2	K562	blood:
3	chr15:58852972..58855278-chr15:58856780..58858614,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10152558	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851637	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11854073	0.83[CHB][hapmap]
rs11857411	0.84[AMR][1000 genomes]
rs11858020	0.89[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1427281	0.83[CHB][hapmap]
rs17190678	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap]
rs1869132	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2555356	0.83[CHB][hapmap]
rs347117	0.83[CHB][hapmap]
rs383902	0.91[CHB][hapmap]
rs442495	0.83[CHB][hapmap]
rs4528512	0.80[EUR][1000 genomes]
rs4774310	0.83[CHB][hapmap]
rs4775087	0.83[CHB][hapmap]
rs507801	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs605928	0.91[CHB][hapmap]
rs6083	0.87[MEX][hapmap]
rs6494036	0.83[CHB][hapmap]
rs653765	0.83[CHB][hapmap]
rs67688669	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67897154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs714696	0.83[CHB][hapmap]
rs7161889	0.83[CHB][hapmap]
rs7166788	0.92[CEU][hapmap]
rs7171818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7183336	0.83[CHB][hapmap]
rs8027708	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8030893	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1050231	chr15:58848727-58863526	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1043560	chr15:58851369-58863526	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58844600-58860400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:58847200-58860400	Weak transcription	Thymus	Thymus
3	chr15:58848200-58857400	Weak transcription	Colonic Mucosa	Colon
4	chr15:58848200-58858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:58852400-58860400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:58853200-58865000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:58853600-58860200	Weak transcription	Stomach Mucosa	stomach
8	chr15:58854200-58860400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:58854200-58860400	Weak transcription	Pancreas	Pancrea
10	chr15:58854400-58859000	Strong transcription	Liver	Liver
11	chr15:58854600-58860400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:58854600-58864200	Weak transcription	HepG2	liver
13	chr15:58854800-58868400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:58857000-58857800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr15:58857200-58857600	Enhancers	Fetal Muscle Leg	muscle
16	chr15:58857200-58857800	Enhancers	Fetal Thymus	thymus
17	chr15:58857200-58858600	Enhancers	Adipose Nuclei	Adipose

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