Variant report

Variant	rs442495
Chromosome Location	chr15:59022615-59022616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59020037..59022802-chr15:59058801..59061672,2	K562	blood:
2	chr15:59021784..59023726-chr15:59040187..59042345,2	K562	blood:
3	chr15:59022433..59024447-chr15:59041685..59043916,2	K562	blood:
4	chr15:59021059..59023749-chr15:59034779..59037397,2	K562	blood:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11071398	0.95[YRI][hapmap]
rs11638244	0.94[YRI][hapmap]
rs11854073	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12439457	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12899638	1.00[YRI][hapmap]
rs12911832	0.84[ASN][1000 genomes]
rs12912003	0.91[ASN][1000 genomes]
rs1427281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1427282	1.00[YRI][hapmap]
rs1648532	0.90[CHB][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17190727	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17269397	0.83[CHB][hapmap]
rs1834747	0.80[ASN][1000 genomes]
rs2250583	0.82[AMR][1000 genomes]
rs2555356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2657125	1.00[YRI][hapmap]
rs28864995	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs347115	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs347117	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs383902	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs387812	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs421829	0.85[AFR][1000 genomes]
rs474875	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4774310	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4775087	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4775094	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs507801	1.00[JPT][hapmap]
rs585192	0.81[AMR][1000 genomes]
rs596379	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs605928	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs610877	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes]
rs618684	0.84[EUR][1000 genomes]
rs640704	0.81[AMR][1000 genomes]
rs6494029	1.00[YRI][hapmap]
rs6494035	0.91[ASN][1000 genomes]
rs6494036	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6494037	0.88[ASN][1000 genomes]
rs650366	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs653765	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs673813	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs714696	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7161889	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7163162	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7183336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs972801	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58977200-59039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:58990000-59023400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:58992000-59023000	Weak transcription	Esophagus	oesophagus
4	chr15:58992000-59023800	Weak transcription	Aorta	Aorta
5	chr15:58999000-59023800	Weak transcription	Gastric	stomach
6	chr15:59005600-59023000	Weak transcription	Spleen	Spleen
7	chr15:59005600-59023600	Weak transcription	NHEK	skin
8	chr15:59005800-59022800	Weak transcription	HMEC	breast
9	chr15:59005800-59025200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:59006200-59023800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:59006200-59024000	Weak transcription	Pancreas	Pancrea
12	chr15:59006400-59022800	Weak transcription	Fetal Intestine Small	intestine
13	chr15:59007400-59026400	Weak transcription	Fetal Intestine Large	intestine
14	chr15:59008600-59028400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:59009600-59029600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:59009800-59035400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:59010200-59024000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:59010200-59024200	Weak transcription	HepG2	liver
19	chr15:59010800-59031200	Weak transcription	Dnd41	blood
20	chr15:59011200-59023800	Weak transcription	Hela-S3	cervix
21	chr15:59013200-59030200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:59013400-59024000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:59013400-59029800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:59015000-59024200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr15:59016800-59025000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:59016800-59034200	Weak transcription	Brain Germinal Matrix	brain
27	chr15:59017000-59022800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:59017000-59023800	Weak transcription	Fetal Heart	heart
29	chr15:59017000-59024000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr15:59017200-59023000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:59017200-59023400	Weak transcription	Brain Anterior Caudate	brain
32	chr15:59017200-59023600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:59017200-59023600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:59017200-59023600	Weak transcription	Stomach Mucosa	stomach
35	chr15:59017200-59023800	Weak transcription	Adipose Nuclei	Adipose
36	chr15:59017200-59023800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:59017200-59023800	Weak transcription	K562	blood
38	chr15:59017200-59023800	Weak transcription	NH-A	brain
39	chr15:59017200-59027400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:59017200-59034400	Weak transcription	Fetal Kidney	kidney
41	chr15:59017400-59022800	Weak transcription	Right Atrium	heart
42	chr15:59017400-59023000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:59017400-59023800	Weak transcription	Right Ventricle	heart
44	chr15:59017400-59023800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:59017400-59024000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:59017400-59024000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:59017400-59024000	Weak transcription	Small Intestine	intestine
48	chr15:59017400-59029000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr15:59018000-59023200	Weak transcription	HSMM	muscle
50	chr15:59018200-59023800	Weak transcription	NHLF	lung

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