Variant report

Variant	rs6494037
Chromosome Location	chr15:59016315-59016316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59006673..59008255-chr15:59014528..59016960,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11854073	0.82[AMR][1000 genomes]
rs12439457	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12911832	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12911961	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12912003	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1427281	0.81[ASN][1000 genomes]
rs2250583	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2555356	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs347117	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs442495	0.88[ASN][1000 genomes]
rs4774310	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4775087	0.83[AMR][1000 genomes]
rs507801	0.83[EUR][1000 genomes]
rs585192	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs602602	0.82[EUR][1000 genomes]
rs605928	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs640704	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6494035	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6494036	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs653765	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7161889	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7163162	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7183336	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58977200-59039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:58983200-59016600	Weak transcription	Small Intestine	intestine
3	chr15:58986600-59016600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:58989800-59016800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:58990000-59023400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:58992000-59023000	Weak transcription	Esophagus	oesophagus
7	chr15:58992000-59023800	Weak transcription	Aorta	Aorta
8	chr15:58992600-59016600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:58992600-59021000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:58994400-59016400	Weak transcription	Adipose Nuclei	Adipose
11	chr15:58996000-59016600	Weak transcription	Colonic Mucosa	Colon
12	chr15:58996200-59016800	Weak transcription	Psoas Muscle	Psoas
13	chr15:58996600-59016600	Weak transcription	NHLF	lung
14	chr15:58996600-59016800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:58998400-59016600	Weak transcription	Osteobl	bone
16	chr15:58998600-59016600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:58998600-59016800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:58999000-59023800	Weak transcription	Gastric	stomach
19	chr15:59003400-59016400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:59003800-59016600	Weak transcription	NH-A	brain
21	chr15:59005200-59022400	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:59005600-59021600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:59005600-59023000	Weak transcription	Spleen	Spleen
24	chr15:59005600-59023600	Weak transcription	NHEK	skin
25	chr15:59005800-59022800	Weak transcription	HMEC	breast
26	chr15:59005800-59025200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:59006200-59023800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:59006200-59024000	Weak transcription	Pancreas	Pancrea
29	chr15:59006400-59016600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr15:59006400-59016800	Weak transcription	HSMMtube	muscle
31	chr15:59006400-59017000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:59006400-59017000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:59006400-59021600	Weak transcription	Fetal Stomach	stomach
34	chr15:59006400-59022800	Weak transcription	Fetal Intestine Small	intestine
35	chr15:59007400-59026400	Weak transcription	Fetal Intestine Large	intestine
36	chr15:59008600-59028400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:59009400-59016600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:59009600-59016800	Weak transcription	Stomach Mucosa	stomach
39	chr15:59009600-59029600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:59009800-59016400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:59009800-59016600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:59009800-59016600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:59009800-59016600	Weak transcription	Placenta	Placenta
44	chr15:59009800-59016800	Weak transcription	Fetal Kidney	kidney
45	chr15:59009800-59018000	Weak transcription	Liver	Liver
46	chr15:59009800-59021000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:59009800-59035400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:59010000-59016400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:59010000-59016600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr15:59010000-59016600	Weak transcription	HSMM	muscle

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