Variant report

Variant	rs7166788
Chromosome Location	chr15:58841736-58841737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58841313..58844294-chr15:58848370..58850226,2	K562	blood:
2	chr15:58730575..58732285-chr15:58839559..58842370,2	K562	blood:
3	chr15:58841673..58842595-chr20:49248753..49249599,2	MCF-7	breast:
4	chr15:58839847..58842164-chr15:59040340..59041855,2	MCF-7	breast:
5	chr15:58840975..58843014-chr15:59224464..59226714,2	MCF-7	breast:
6	chr15:58836656..58842196-chr15:58843431..58849915,8	K562	blood:
7	chr15:58810857..58816650-chr15:58835363..58842392,10	K562	blood:

Variant related genes	Relation type
ENSG00000259476	Chromatin interaction
ENSG00000137776	Chromatin interaction
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10152558	0.89[CEU][hapmap]
rs10459627	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11858020	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17190678	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17269397	0.92[CEU][hapmap]
rs41294813	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4528512	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs45500398	0.86[EUR][1000 genomes]
rs56010348	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56171273	0.95[ASN][1000 genomes]
rs6084	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58827600-58843400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:58829000-58847600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:58835600-58843200	Weak transcription	Thymus	Thymus
4	chr15:58837000-58848400	Enhancers	Fetal Thymus	thymus
5	chr15:58837400-58843000	Enhancers	Fetal Heart	heart
6	chr15:58838000-58845000	Enhancers	Placenta	Placenta
7	chr15:58838200-58845600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:58838400-58843000	Enhancers	Left Ventricle	heart
9	chr15:58838400-58843400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:58838400-58843800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:58838600-58842000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:58838600-58842600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:58838600-58842600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:58838600-58842800	Weak transcription	Dnd41	blood
15	chr15:58838600-58843400	Weak transcription	Primary T cells from cord blood	blood
16	chr15:58838800-58842200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:58838800-58842200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:58838800-58842800	Enhancers	Fetal Muscle Leg	muscle
19	chr15:58838800-58843000	Enhancers	Fetal Stomach	stomach
20	chr15:58838800-58843400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:58838800-58844000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:58838800-58845000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr15:58839000-58842400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:58839000-58843400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:58839000-58843400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:58839200-58845200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr15:58839600-58843400	Weak transcription	Lung	lung
28	chr15:58839600-58843800	Weak transcription	Esophagus	oesophagus
29	chr15:58839600-58843800	Enhancers	HSMM	muscle
30	chr15:58839600-58844000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:58839600-58844200	Weak transcription	Small Intestine	intestine
32	chr15:58839800-58843600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:58839800-58844400	Weak transcription	Ovary	ovary
34	chr15:58839800-58844400	Weak transcription	Spleen	Spleen
35	chr15:58840000-58842000	Enhancers	A549	lung
36	chr15:58840000-58842600	Weak transcription	HepG2	liver
37	chr15:58840000-58843600	Weak transcription	Adipose Nuclei	Adipose
38	chr15:58840200-58843400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:58840200-58844800	Strong transcription	Liver	Liver
40	chr15:58840400-58842800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:58840400-58843400	Weak transcription	NHEK	skin
42	chr15:58840400-58843600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:58840600-58843400	Weak transcription	HMEC	breast
44	chr15:58840600-58843400	Weak transcription	HUVEC	blood vessel
45	chr15:58840600-58843400	Weak transcription	NHDF-Ad	bronchial
46	chr15:58840600-58843800	Weak transcription	Hela-S3	cervix
47	chr15:58840600-58844000	Enhancers	HSMMtube	muscle
48	chr15:58840600-58844200	Weak transcription	Right Atrium	heart
49	chr15:58840600-58849200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:58840800-58842200	Enhancers	Colon Smooth Muscle	Colon

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