Variant report

Variant	rs6769194
Chromosome Location	chr3:105684620-105684621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105586893..105589372-chr3:105681832..105684656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114423	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11916931	1.00[ASN][1000 genomes]
rs12487662	1.00[ASN][1000 genomes]
rs6437632	0.97[EUR][1000 genomes]
rs6774974	0.95[EUR][1000 genomes]
rs6799245	0.94[EUR][1000 genomes]
rs73190038	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs73190040	1.00[EUR][1000 genomes]
rs73190046	1.00[EUR][1000 genomes]
rs73190048	1.00[EUR][1000 genomes]
rs73190057	0.97[EUR][1000 genomes]
rs73190064	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105677600-105689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:105681800-105686000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:105682000-105685800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:105682400-105685800	Weak transcription	Hela-S3	cervix
5	chr3:105683600-105685000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:105683600-105686800	Enhancers	Osteobl	bone
7	chr3:105683800-105686600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:105683800-105686800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:105683800-105686800	Enhancers	NHDF-Ad	bronchial
10	chr3:105684000-105685200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:105684000-105686600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:105684200-105684800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:105684200-105684800	Enhancers	Adipose Nuclei	Adipose
14	chr3:105684200-105685000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:105684400-105684800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:105684400-105684800	Enhancers	Fetal Kidney	kidney
17	chr3:105684400-105686800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:105684600-105684800	Enhancers	Fetal Stomach	stomach
19	chr3:105684600-105685000	Enhancers	Fetal Muscle Leg	muscle
20	chr3:105684600-105685000	Enhancers	Ovary	ovary
21	chr3:105684600-105685800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:105684600-105685800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:105684600-105686000	Weak transcription	Fetal Lung	lung
24	chr3:105684600-105686000	Weak transcription	HMEC	breast

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