Variant report

Variant	rs73190038
Chromosome Location	chr3:105682205-105682206
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6437632	0.96[EUR][1000 genomes]
rs6769194	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6774974	0.94[EUR][1000 genomes]
rs6799245	0.92[EUR][1000 genomes]
rs73190040	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73190046	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73190048	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73190057	0.96[EUR][1000 genomes]
rs73190064	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105677600-105689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:105677800-105684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:105679400-105683600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:105680800-105682600	Enhancers	HepG2	liver
5	chr3:105681200-105682400	Enhancers	Right Atrium	heart
6	chr3:105681200-105682400	Enhancers	Stomach Mucosa	stomach
7	chr3:105681200-105682400	Enhancers	Hela-S3	cervix
8	chr3:105681600-105682400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:105681800-105683600	Weak transcription	Osteobl	bone
10	chr3:105681800-105686000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:105682000-105685800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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