Variant report

Variant	rs6769854
Chromosome Location	chr3:134676397-134676398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134667860..134670173-chr3:134674253..134676895,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11707505	0.85[JPT][hapmap]
rs11707539	0.86[JPT][hapmap]
rs11719020	0.86[JPT][hapmap]
rs12495634	0.86[JPT][hapmap]
rs1457560	0.86[JPT][hapmap]
rs1457562	0.85[JPT][hapmap]
rs1562508	0.85[JPT][hapmap]
rs1562509	0.86[JPT][hapmap]
rs185257	0.85[JPT][hapmap]
rs1982548	0.86[JPT][hapmap]
rs2045451	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3940695	0.84[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955459	0.85[JPT][hapmap]
rs4955460	0.84[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955520	0.85[JPT][hapmap]
rs4955522	0.85[JPT][hapmap]
rs4955524	0.85[JPT][hapmap]
rs4955527	0.85[JPT][hapmap]
rs6439537	0.86[JPT][hapmap]
rs6439538	0.86[JPT][hapmap]
rs6768729	0.86[JPT][hapmap]
rs6776308	0.86[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781640	0.85[JPT][hapmap]
rs6782004	0.84[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795875	0.82[JPT][hapmap]
rs6799875	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6806959	0.86[JPT][hapmap]
rs7644369	0.85[JPT][hapmap]
rs9289487	0.86[JPT][hapmap]
rs936323	0.85[JPT][hapmap]
rs936324	0.86[JPT][hapmap]
rs936325	0.84[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972234	0.85[JPT][hapmap]
rs975148	0.85[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9815290	0.85[JPT][hapmap]
rs9818859	0.84[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825380	0.85[JPT][hapmap]
rs9856814	0.85[JPT][hapmap]
rs9859282	0.86[JPT][hapmap]
rs9868665	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9869233	0.86[JPT][hapmap]
rs9874260	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134665000-134676800	Weak transcription	Psoas Muscle	Psoas
2	chr3:134671000-134676600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134671000-134677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:134671000-134677600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:134671000-134679400	Weak transcription	Spleen	Spleen
6	chr3:134671000-134682800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:134671000-134684600	Weak transcription	Brain Germinal Matrix	brain
8	chr3:134671000-134693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:134671400-134684400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:134672400-134676800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:134672400-134677000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:134673800-134684600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:134675200-134684600	Weak transcription	Fetal Brain Female	brain
15	chr3:134675600-134677400	Enhancers	GM12878-XiMat	blood

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