Variant report

Variant	rs6799875
Chromosome Location	chr3:134660196-134660197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10935143	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1870196	0.86[CEU][hapmap]
rs2045451	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772657	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3772658	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3940695	0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4955460	0.95[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6769854	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6775023	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6776308	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6782004	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6789372	0.81[CEU][hapmap]
rs6799629	0.98[ASN][1000 genomes]
rs6801218	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7636391	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs875984	0.82[CEU][hapmap]
rs936325	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs975148	0.88[CHB][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9818859	0.95[CEU][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9868665	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9874260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3464261	chr3:134659977-134660454	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3464262	chr3:134660159-134660410	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134650600-134660600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
3	chr3:134657800-134660800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:134658200-134669000	Weak transcription	Fetal Brain Female	brain
5	chr3:134658600-134660600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:134659400-134660600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:134659400-134660800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:134659600-134661400	Enhancers	HUES48 Cell Line	embryonic stem cell

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