Variant report

Variant	rs7636391
Chromosome Location	chr3:134662840-134662841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10935143	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11707505	0.91[EUR][1000 genomes]
rs11707539	0.91[EUR][1000 genomes]
rs11719020	0.91[EUR][1000 genomes]
rs11929692	0.91[EUR][1000 genomes]
rs1457558	0.89[EUR][1000 genomes]
rs1457559	0.89[EUR][1000 genomes]
rs1457560	0.89[EUR][1000 genomes]
rs1457561	0.89[EUR][1000 genomes]
rs1457562	0.89[EUR][1000 genomes]
rs1457563	0.89[EUR][1000 genomes]
rs1562508	0.90[EUR][1000 genomes]
rs1562509	0.90[EUR][1000 genomes]
rs1982548	0.91[EUR][1000 genomes]
rs2045451	0.98[ASN][1000 genomes]
rs2895707	0.89[EUR][1000 genomes]
rs36170	0.85[EUR][1000 genomes]
rs4955459	0.91[EUR][1000 genomes]
rs4955461	0.89[EUR][1000 genomes]
rs4955520	0.91[EUR][1000 genomes]
rs4955522	0.91[EUR][1000 genomes]
rs4955523	0.90[EUR][1000 genomes]
rs4955524	0.90[EUR][1000 genomes]
rs4955527	0.89[EUR][1000 genomes]
rs4955530	0.89[EUR][1000 genomes]
rs58101610	0.91[EUR][1000 genomes]
rs6439537	0.90[EUR][1000 genomes]
rs6439538	0.90[EUR][1000 genomes]
rs6439539	0.89[EUR][1000 genomes]
rs6768729	0.88[EUR][1000 genomes]
rs6768739	0.86[EUR][1000 genomes]
rs6769875	0.90[EUR][1000 genomes]
rs6775023	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781640	0.89[EUR][1000 genomes]
rs6782446	0.89[EUR][1000 genomes]
rs6785203	0.90[EUR][1000 genomes]
rs6795875	0.89[EUR][1000 genomes]
rs6795876	0.89[EUR][1000 genomes]
rs6799629	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799875	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6801218	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806959	0.89[EUR][1000 genomes]
rs7629642	0.89[EUR][1000 genomes]
rs7637367	0.89[EUR][1000 genomes]
rs7644369	0.91[EUR][1000 genomes]
rs9289487	0.88[EUR][1000 genomes]
rs936323	0.89[EUR][1000 genomes]
rs936324	0.89[EUR][1000 genomes]
rs972234	0.91[EUR][1000 genomes]
rs972235	0.90[EUR][1000 genomes]
rs972236	0.91[EUR][1000 genomes]
rs975148	0.81[ASN][1000 genomes]
rs9815290	0.91[EUR][1000 genomes]
rs9824682	0.91[EUR][1000 genomes]
rs9825380	0.91[EUR][1000 genomes]
rs9830286	0.89[EUR][1000 genomes]
rs9859282	0.88[EUR][1000 genomes]
rs9869233	0.91[EUR][1000 genomes]
rs9874260	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
2	chr3:134658200-134669000	Weak transcription	Fetal Brain Female	brain
3	chr3:134661200-134669200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:134662200-134669200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:134662400-134663200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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