Variant report

Variant	rs6801218
Chromosome Location	chr3:134662251-134662252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10935143	0.88[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11707505	0.84[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs11707539	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs11719020	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs11929692	0.90[EUR][1000 genomes]
rs1457558	0.88[EUR][1000 genomes]
rs1457559	0.88[EUR][1000 genomes]
rs1457560	0.88[EUR][1000 genomes]
rs1457561	0.88[EUR][1000 genomes]
rs1457562	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs1457563	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs1562508	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs1562509	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs185257	0.91[TSI][hapmap]
rs1982548	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs2045451	0.98[ASN][1000 genomes]
rs2895707	0.88[EUR][1000 genomes]
rs36170	0.85[EUR][1000 genomes]
rs3772657	1.00[JPT][hapmap]
rs3772658	1.00[JPT][hapmap]
rs3940695	0.86[CHB][hapmap]
rs4955459	0.84[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs4955460	0.83[MEX][hapmap]
rs4955461	0.80[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs4955520	0.84[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs4955522	0.84[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs4955523	0.89[EUR][1000 genomes]
rs4955524	0.84[CEU][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs4955527	0.80[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs4955530	0.89[EUR][1000 genomes]
rs58101610	0.90[EUR][1000 genomes]
rs6439537	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs6439538	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs6439539	0.88[EUR][1000 genomes]
rs6763913	0.88[CEU][hapmap]
rs6768729	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs6768739	0.85[EUR][1000 genomes]
rs6769875	0.89[EUR][1000 genomes]
rs6775023	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781640	0.80[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs6782446	0.88[EUR][1000 genomes]
rs6785203	0.89[EUR][1000 genomes]
rs6795875	0.88[EUR][1000 genomes]
rs6795876	0.88[EUR][1000 genomes]
rs6799629	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799875	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6806959	0.88[EUR][1000 genomes]
rs7629642	0.89[EUR][1000 genomes]
rs7636391	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637367	0.89[EUR][1000 genomes]
rs7644369	0.84[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs9289487	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs936323	0.80[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs936324	0.88[EUR][1000 genomes]
rs972234	0.84[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs972235	0.90[EUR][1000 genomes]
rs972236	0.90[EUR][1000 genomes]
rs975148	0.81[ASN][1000 genomes]
rs975149	0.91[TSI][hapmap]
rs9815290	0.81[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs9818859	0.83[MEX][hapmap]
rs9824682	0.90[EUR][1000 genomes]
rs9825380	0.84[CEU][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs9830286	0.89[EUR][1000 genomes]
rs9856814	0.89[TSI][hapmap]
rs9859282	0.88[EUR][1000 genomes]
rs9869233	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs9874260	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
2	chr3:134658200-134669000	Weak transcription	Fetal Brain Female	brain
3	chr3:134661200-134669200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:134661800-134662400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr3:134662200-134669200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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