Variant report

Variant	rs6763913
Chromosome Location	chr3:134660284-134660285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10935143	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs11707505	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs11707539	0.96[CEU][hapmap];0.92[CHB][hapmap]
rs11719020	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs12495634	0.83[CHB][hapmap]
rs1457560	0.91[CEU][hapmap];0.92[CHB][hapmap]
rs1457562	0.95[CEU][hapmap];0.91[CHB][hapmap]
rs1457563	0.90[CEU][hapmap];0.89[CHB][hapmap]
rs1562508	0.96[CEU][hapmap];0.92[CHB][hapmap]
rs1562509	0.96[CEU][hapmap];0.92[CHB][hapmap]
rs185257	0.91[CHB][hapmap]
rs1982548	0.96[CEU][hapmap];0.92[CHB][hapmap]
rs36160	0.83[CHB][hapmap]
rs36161	0.82[CHB][hapmap]
rs36167	0.82[CHB][hapmap]
rs4955459	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs4955461	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs4955520	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs4955522	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs4955524	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs4955527	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs6439537	0.96[CEU][hapmap];0.92[CHB][hapmap]
rs6439538	0.96[CEU][hapmap];0.92[CHB][hapmap]
rs6768729	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs6781640	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs6795875	0.86[CEU][hapmap]
rs6801218	0.88[CEU][hapmap]
rs6806959	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs7636504	0.82[CHB][hapmap]
rs7644369	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs9289487	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs936323	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs936324	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs972234	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs975148	0.89[JPT][hapmap]
rs975149	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9815290	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs9819131	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9825380	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs9856814	0.91[CHB][hapmap]
rs9859282	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs9869233	0.96[CEU][hapmap];0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3464261	chr3:134659977-134660454	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3464262	chr3:134660159-134660410	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134650600-134660600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
3	chr3:134657800-134660800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:134658200-134669000	Weak transcription	Fetal Brain Female	brain
5	chr3:134658600-134660600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:134659400-134660600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:134659400-134660800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:134659600-134661400	Enhancers	HUES48 Cell Line	embryonic stem cell

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