Variant report

Variant	rs9819131
Chromosome Location	chr3:134664933-134664934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10935143	0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11707505	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11707539	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11719020	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11929692	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12495634	0.83[CHB][hapmap]
rs1457559	0.82[ASN][1000 genomes]
rs1457560	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs1457561	0.82[ASN][1000 genomes]
rs1457562	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1457563	0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1562508	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1562509	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs185257	0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs187587	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs1982548	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2895707	0.82[ASN][1000 genomes]
rs36129	0.89[YRI][hapmap]
rs36160	0.81[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs36161	0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs36165	0.92[EUR][1000 genomes]
rs36167	0.85[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes]
rs36168	0.92[EUR][1000 genomes]
rs36169	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs36171	0.91[EUR][1000 genomes]
rs36172	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs36176	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs36177	0.89[EUR][1000 genomes]
rs36178	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs36179	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs36180	0.89[EUR][1000 genomes]
rs36181	0.88[EUR][1000 genomes]
rs36182	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs36183	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs36184	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs36185	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs36186	0.86[EUR][1000 genomes]
rs39701	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs39702	0.89[EUR][1000 genomes]
rs39703	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs39704	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs40157	0.89[EUR][1000 genomes]
rs40437	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs42883	0.90[EUR][1000 genomes]
rs4955459	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4955461	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4955520	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4955522	0.91[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4955523	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4955524	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4955527	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4955528	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4955530	0.82[ASN][1000 genomes]
rs504033	0.89[EUR][1000 genomes]
rs58101610	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6439537	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6439538	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6439539	0.82[ASN][1000 genomes]
rs6763913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6768729	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs6769875	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6781640	0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6782446	0.82[ASN][1000 genomes]
rs6785203	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6795875	0.82[ASN][1000 genomes]
rs6795876	0.82[ASN][1000 genomes]
rs680054	0.89[EUR][1000 genomes]
rs6806959	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs7629642	0.82[ASN][1000 genomes]
rs7636504	0.82[CHB][hapmap]
rs7637367	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7644369	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9289487	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs936323	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs936324	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs972234	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs972235	0.80[EUR][1000 genomes]
rs972236	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs975148	0.89[JPT][hapmap]
rs975149	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9815290	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9824682	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9825380	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9830286	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9856814	0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9859282	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs9869233	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
2	chr3:134658200-134669000	Weak transcription	Fetal Brain Female	brain
3	chr3:134661200-134669200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:134662200-134669200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:134663800-134669800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134664200-134668000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:134664800-134665000	Enhancers	Psoas Muscle	Psoas

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