Variant report

Variant	rs36183
Chromosome Location	chr3:134645401-134645402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs185257	0.86[EUR][1000 genomes]
rs187587	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs36160	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs36161	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs36165	0.95[EUR][1000 genomes]
rs36167	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs36168	0.95[EUR][1000 genomes]
rs36169	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs36171	0.94[EUR][1000 genomes]
rs36172	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs36176	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs36177	0.98[EUR][1000 genomes]
rs36178	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs36179	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs36180	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs36181	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36182	1.00[CEU][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36184	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36185	0.96[CEU][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36186	0.96[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36187	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs39701	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs39702	0.98[EUR][1000 genomes]
rs39703	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs39704	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs40157	0.98[EUR][1000 genomes]
rs40437	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs42883	0.95[EUR][1000 genomes]
rs4955528	0.84[EUR][1000 genomes]
rs504033	0.98[EUR][1000 genomes]
rs680054	0.98[EUR][1000 genomes]
rs975149	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs9819131	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs9856814	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460859	chr3:134626339-134645710	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134639000-134649400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:134639400-134653800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134641600-134650400	Weak transcription	Fetal Brain Male	brain
4	chr3:134641800-134649800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134642400-134653800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:134644200-134649600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:134644200-134654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134644400-134646400	Weak transcription	GM12878-XiMat	blood
9	chr3:134644600-134656400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:134644800-134649000	Enhancers	Fetal Muscle Leg	muscle
11	chr3:134645200-134647200	Enhancers	HSMMtube	muscle
12	chr3:134645200-134649200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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